Variant report

Variant	rs16929106
Chromosome Location	chr11:36617815-36617816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36611242..36613521-chr11:36616651..36619477,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1022366	0.91[EUR][1000 genomes]
rs11033708	1.00[JPT][hapmap]
rs12277943	1.00[EUR][1000 genomes]
rs12281426	0.91[EUR][1000 genomes]
rs12419750	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1399599	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1518743	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1518744	0.91[EUR][1000 genomes]
rs1581277	0.91[EUR][1000 genomes]
rs16929104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929119	0.80[ASN][1000 genomes]
rs16929150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16929212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929216	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16929256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929337	0.91[EUR][1000 genomes]
rs16929341	0.91[EUR][1000 genomes]
rs16929343	0.82[EUR][1000 genomes]
rs16929405	0.82[EUR][1000 genomes]
rs17632113	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17637763	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2030251	0.91[EUR][1000 genomes]
rs2048992	0.82[EUR][1000 genomes]
rs2088511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2101987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2422363	0.91[EUR][1000 genomes]
rs35908685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151013	1.00[EUR][1000 genomes]
rs4151024	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4151044	0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58327863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61541121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110520	0.85[ASN][1000 genomes]
rs73437973	0.80[ASN][1000 genomes]
rs73455545	0.80[ASN][1000 genomes]
rs73455553	0.80[ASN][1000 genomes]
rs7924384	0.91[EUR][1000 genomes]
rs7952663	0.91[EUR][1000 genomes]
rs975487	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1850719	chr11:36616867-36657272	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36614200-36619600	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr11:36616600-36621800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36616600-36640400	Weak transcription	Esophagus	oesophagus
4	chr11:36616600-36657000	Weak transcription	Left Ventricle	heart
5	chr11:36616800-36621800	Active TSS	Fetal Thymus	thymus
6	chr11:36616800-36639600	Weak transcription	Aorta	Aorta
7	chr11:36617000-36618000	Enhancers	Primary T cells from cord blood	blood
8	chr11:36617000-36618200	Enhancers	Adipose Nuclei	Adipose
9	chr11:36617000-36618200	Enhancers	Fetal Heart	heart
10	chr11:36617000-36622200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:36617200-36618000	Weak transcription	Psoas Muscle	Psoas
12	chr11:36617200-36618200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:36617200-36618400	Enhancers	Colon Smooth Muscle	Colon
14	chr11:36617200-36621800	Active TSS	Thymus	Thymus
15	chr11:36617200-36622000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:36617200-36626800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:36617200-36630000	Weak transcription	HSMMtube	muscle
18	chr11:36617200-36640000	Weak transcription	Fetal Stomach	stomach
19	chr11:36617400-36618000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr11:36617400-36632400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:36617600-36622000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:36617800-36618000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:36617800-36618200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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