Variant report

Variant	rs61541121
Chromosome Location	chr11:36704316-36704317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36660144..36660808-chr11:36704212..36704764,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1022366	0.91[EUR][1000 genomes]
rs12277943	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12281426	0.91[EUR][1000 genomes]
rs1399599	1.00[EUR][1000 genomes]
rs1518743	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1518744	0.91[EUR][1000 genomes]
rs1581277	0.91[EUR][1000 genomes]
rs16929104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16929337	0.91[EUR][1000 genomes]
rs16929341	0.91[EUR][1000 genomes]
rs16929343	0.82[EUR][1000 genomes]
rs16929405	0.82[EUR][1000 genomes]
rs17632113	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17637763	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2030251	0.91[EUR][1000 genomes]
rs2048992	0.82[EUR][1000 genomes]
rs2088511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101987	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422363	0.91[EUR][1000 genomes]
rs35908685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41337252	1.00[AFR][1000 genomes]
rs41356646	0.83[AFR][1000 genomes]
rs41503550	0.83[AFR][1000 genomes]
rs4151013	1.00[EUR][1000 genomes]
rs4151024	1.00[EUR][1000 genomes]
rs4151044	1.00[EUR][1000 genomes]
rs56906519	1.00[AFR][1000 genomes]
rs57024706	1.00[AFR][1000 genomes]
rs58327863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59512297	0.83[AFR][1000 genomes]
rs60156568	1.00[AFR][1000 genomes]
rs60638752	1.00[AFR][1000 genomes]
rs61378505	1.00[AFR][1000 genomes]
rs7924384	0.91[EUR][1000 genomes]
rs7952663	0.91[EUR][1000 genomes]
rs975487	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36703200-36705600	Enhancers	Fetal Thymus	thymus
2	chr11:36704000-36704800	Enhancers	Thymus	Thymus
3	chr11:36704200-36704600	Flanking Active TSS	Dnd41	blood

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