Variant report

Variant	rs16929405
Chromosome Location	chr11:36766362-36766363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:36585872..36586620-chr11:36765861..36766774,5	MCF-7	breast:
2	chr11:36760152..36763496-chr11:36764810..36767505,3	K562	blood:
3	chr11:36724082..36725333-chr11:36765913..36767362,6	MCF-7	breast:
4	chr11:36724020..36724871-chr11:36765820..36767130,6	MCF-7	breast:
5	chr11:36722899..36725054-chr11:36764886..36767764,2	MCF-7	breast:
6	chr11:36724313..36724958-chr11:36765739..36766377,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1022366	0.91[EUR][1000 genomes]
rs12277943	0.82[EUR][1000 genomes]
rs12281426	0.91[EUR][1000 genomes]
rs1399599	0.82[EUR][1000 genomes]
rs1518744	0.91[EUR][1000 genomes]
rs1581277	0.91[EUR][1000 genomes]
rs16929104	0.82[EUR][1000 genomes]
rs16929106	0.82[EUR][1000 genomes]
rs16929150	0.82[EUR][1000 genomes]
rs16929190	0.82[EUR][1000 genomes]
rs16929212	0.82[EUR][1000 genomes]
rs16929256	0.82[EUR][1000 genomes]
rs16929265	0.82[EUR][1000 genomes]
rs16929271	0.82[EUR][1000 genomes]
rs16929274	0.82[EUR][1000 genomes]
rs16929337	0.91[EUR][1000 genomes]
rs16929341	0.91[EUR][1000 genomes]
rs16929343	0.82[EUR][1000 genomes]
rs2030251	0.91[EUR][1000 genomes]
rs2048992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2088511	0.82[EUR][1000 genomes]
rs2101987	0.82[EUR][1000 genomes]
rs2422363	0.91[EUR][1000 genomes]
rs34392904	0.85[AFR][1000 genomes]
rs35908685	0.82[EUR][1000 genomes]
rs4151013	0.82[EUR][1000 genomes]
rs4151024	0.82[EUR][1000 genomes]
rs4151044	0.82[EUR][1000 genomes]
rs58327863	0.82[EUR][1000 genomes]
rs60225227	0.96[AFR][1000 genomes]
rs61541121	0.82[EUR][1000 genomes]
rs7924384	0.91[EUR][1000 genomes]
rs7952663	0.91[EUR][1000 genomes]
rs975487	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1047073	chr11:36711638-36812910	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1041508	chr11:36711638-36815367	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1043391	chr11:36711638-36817144	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv554007	chr11:36711834-36825618	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv11137	chr11:36730247-36788022	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv2761663	chr11:36730335-36786817	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16929405	FABP4	trans	brain	seeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36765000-36766800	Enhancers	Dnd41	blood
2	chr11:36765800-36766600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:36766000-36766400	Enhancers	Adipose Nuclei	Adipose
4	chr11:36766000-36766400	Enhancers	Fetal Muscle Leg	muscle
5	chr11:36766000-36766600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:36766000-36766600	Enhancers	Primary B cells from peripheral blood	blood
7	chr11:36766000-36766600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:36766000-36766600	Enhancers	Fetal Heart	heart
9	chr11:36766000-36766600	Enhancers	Fetal Stomach	stomach
10	chr11:36766200-36766400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:36766200-36766400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:36766200-36766400	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:36766200-36766400	Enhancers	Pancreas	Pancrea
14	chr11:36766200-36766400	Enhancers	Thymus	Thymus
15	chr11:36766200-36766600	Enhancers	Brain Hippocampus Middle	brain
16	chr11:36766200-36766600	Enhancers	GM12878-XiMat	blood
17	chr11:36766200-36768400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:36766200-36768400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:36766200-36769200	Enhancers	Fetal Thymus	thymus
20	chr11:36766200-36775200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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