Variant report

Variant	rs1518743
Chromosome Location	chr11:36735748-36735749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1022366	0.83[EUR][1000 genomes]
rs12277943	0.92[EUR][1000 genomes]
rs12281426	0.83[EUR][1000 genomes]
rs1399599	0.92[EUR][1000 genomes]
rs1518744	0.83[EUR][1000 genomes]
rs1581277	0.83[EUR][1000 genomes]
rs16929104	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16929106	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16929150	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16929190	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16929212	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16929256	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16929265	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16929271	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16929274	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16929337	0.83[EUR][1000 genomes]
rs16929341	0.83[EUR][1000 genomes]
rs17632113	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17637763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2030251	0.83[EUR][1000 genomes]
rs2088511	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2101987	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2422363	0.83[EUR][1000 genomes]
rs35908685	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4151013	0.92[EUR][1000 genomes]
rs4151024	0.92[EUR][1000 genomes]
rs4151044	0.92[EUR][1000 genomes]
rs58327863	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61541121	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7924384	0.83[EUR][1000 genomes]
rs7952663	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1047073	chr11:36711638-36812910	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1041508	chr11:36711638-36815367	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1043391	chr11:36711638-36817144	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv554007	chr11:36711834-36825618	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv11137	chr11:36730247-36788022	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv2761663	chr11:36730335-36786817	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36734000-36736400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr11:36735200-36735800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:36735200-36736200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:36735200-36736200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:36735200-36736200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr11:36735400-36736000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:36735400-36736200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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