Variant report

Variant	rs504010
Chromosome Location	chr11:94354019-94354020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94352776..94354932-chr11:94361106..94363864,2	K562	blood:
2	chr11:94352894..94355627-chr11:94704967..94707555,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150316	Chromatin interaction
ENSG00000186280	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs508485	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs621425	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs621922	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7933369	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs504010	RP11-685N10.1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94325200-94357600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:94341600-94355200	Weak transcription	Ovary	ovary
3	chr11:94341600-94355200	Weak transcription	Pancreas	Pancrea
4	chr11:94341600-94355400	Weak transcription	Gastric	stomach
5	chr11:94345000-94354800	Weak transcription	Left Ventricle	heart
6	chr11:94347000-94355400	Weak transcription	Brain Substantia Nigra	brain
7	chr11:94347000-94355600	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:94347000-94355800	Weak transcription	NHDF-Ad	bronchial
9	chr11:94347400-94354800	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:94347400-94356600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:94347600-94357200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:94347600-94359600	Weak transcription	Adipose Nuclei	Adipose
13	chr11:94347800-94355600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:94348000-94355200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:94348200-94358400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:94348600-94355400	Weak transcription	Spleen	Spleen
17	chr11:94349000-94356000	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:94349400-94355400	Weak transcription	Primary T cells from cord blood	blood
19	chr11:94349600-94355400	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr11:94349600-94357000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:94349800-94355600	Strong transcription	Fetal Intestine Large	intestine
22	chr11:94350200-94358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:94350200-94358200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:94350600-94355600	Weak transcription	Lung	lung
25	chr11:94350800-94354400	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr11:94351000-94354800	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr11:94351400-94354200	Strong transcription	Duodenum Mucosa	Duodenum
28	chr11:94351400-94356200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:94352200-94357200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:94353000-94354200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:94353000-94354200	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:94353000-94354200	Strong transcription	Fetal Stomach	stomach
33	chr11:94353000-94354200	Strong transcription	Stomach Smooth Muscle	stomach
34	chr11:94353800-94356600	Weak transcription	Fetal Intestine Small	intestine
35	chr11:94354000-94355800	Weak transcription	Brain Anterior Caudate	brain
36	chr11:94354000-94359600	Weak transcription	Aorta	Aorta

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