Variant report

Variant	rs7933369
Chromosome Location	chr11:94356050-94356051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:94356028..94356966-chr11:94701703..94702456,3	MCF-7	breast:
2	chr11:94356040..94356892-chr11:94884187..94884879,3	MCF-7	breast:
3	chr11:94356037..94356629-chr11:94519823..94520555,2	MCF-7	breast:
4	chr11:94355904..94356696-chr11:94500773..94501701,4	MCF-7	breast:
5	chr11:94355961..94356961-chr11:94630148..94631056,6	K562	blood:
6	chr11:94355460..94357488-chr11:94495061..94496119,30	MCF-7	breast:
7	chr11:94354386..94356364-chr11:94503854..94506706,2	K562	blood:
8	chr11:94355898..94357027-chr11:94630133..94631026,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000166025	Chromatin interaction
ENSG00000245552	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1939137	0.81[YRI][hapmap]
rs4445593	0.81[YRI][hapmap]
rs504010	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs508485	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs584426	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs621425	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs621922	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs656244	0.85[CEU][hapmap];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7933369	RP11-685N10.1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94325200-94357600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:94347400-94356600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:94347600-94357200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:94347600-94359600	Weak transcription	Adipose Nuclei	Adipose
5	chr11:94348200-94358400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:94349600-94357000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:94350200-94358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:94350200-94358200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:94351400-94356200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:94352200-94357200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:94353800-94356600	Weak transcription	Fetal Intestine Small	intestine
12	chr11:94354000-94359600	Weak transcription	Aorta	Aorta
13	chr11:94354200-94356200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:94354200-94356400	Weak transcription	Fetal Stomach	stomach
15	chr11:94354200-94356600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:94354200-94359400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:94354400-94357400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:94354800-94357200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:94355000-94356800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:94355400-94357400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr11:94355600-94357600	Weak transcription	Fetal Intestine Large	intestine
22	chr11:94355600-94357800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:94356000-94360200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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