Variant report

Variant	rs656244
Chromosome Location	chr11:94342567-94342568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs508485	0.82[CEU][hapmap]
rs538783	0.91[ASN][1000 genomes]
rs584426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs621425	0.82[CEU][hapmap]
rs621922	0.82[CEU][hapmap]
rs7933369	0.85[CEU][hapmap];0.92[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs656244	SNORD5	cis	cerebellum	SCAN
rs656244	SNORA40	cis	cerebellum	SCAN
rs656244	TAF1D	cis	cerebellum	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
2	chr11:94308200-94342800	Weak transcription	K562	blood
3	chr11:94309200-94342600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:94321000-94344800	Weak transcription	Lung	lung
5	chr11:94321400-94342600	Weak transcription	Fetal Brain Female	brain
6	chr11:94322200-94343600	Weak transcription	Psoas Muscle	Psoas
7	chr11:94323600-94351800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:94324600-94343600	Weak transcription	Spleen	Spleen
9	chr11:94325000-94344400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:94325200-94357600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:94329200-94343000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:94333000-94343200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:94333000-94346200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:94333200-94343000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:94336400-94342600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:94336400-94343000	Weak transcription	Brain Anterior Caudate	brain
17	chr11:94336400-94343800	Weak transcription	Brain Substantia Nigra	brain
18	chr11:94336400-94349600	Weak transcription	Stomach Mucosa	stomach
19	chr11:94336400-94350200	Weak transcription	Brain Angular Gyrus	brain
20	chr11:94336600-94343400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:94339200-94342800	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:94340200-94345400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:94340600-94343400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:94340800-94342600	Strong transcription	Duodenum Mucosa	Duodenum
25	chr11:94341000-94342600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:94341000-94342600	Strong transcription	Adipose Nuclei	Adipose
27	chr11:94341000-94343200	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr11:94341000-94343200	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr11:94341000-94343200	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr11:94341400-94343000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:94341600-94343200	Weak transcription	Colonic Mucosa	Colon
32	chr11:94341600-94343400	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:94341600-94344600	Weak transcription	Fetal Intestine Small	intestine
34	chr11:94341600-94344800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:94341600-94348200	Weak transcription	Fetal Stomach	stomach
36	chr11:94341600-94355200	Weak transcription	Ovary	ovary
37	chr11:94341600-94355200	Weak transcription	Pancreas	Pancrea
38	chr11:94341600-94355400	Weak transcription	Gastric	stomach
39	chr11:94342000-94347600	Weak transcription	Aorta	Aorta
40	chr11:94342200-94342600	Strong transcription	Primary T cells from cord blood	blood
41	chr11:94342400-94342600	ZNF genes & repeats	Fetal Intestine Large	intestine
42	chr11:94342400-94343400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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