Variant report

Variant	rs4445593
Chromosome Location	chr11:94372736-94372737
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:94372714-94373733	HCT-116	colon:	n/a	n/a
2	POLR2A	chr11:94372470-94373499	HCT-116	colon:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIWIL4-1	chr11:94372728-94372901	ENSG00000233536

Variant related genes	Relation type
ENSG00000255666	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10831247	1.00[CEU][hapmap]
rs11020848	1.00[CEU][hapmap]
rs12280509	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12804365	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16920716	1.00[CEU][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1939137	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4391779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4396252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4497362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513811	1.00[EUR][1000 genomes]
rs56927653	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56984061	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57878936	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60268618	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61228487	0.85[EUR][1000 genomes]
rs61433612	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7111997	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7119735	1.00[CEU][hapmap]
rs7130459	0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs7933369	0.81[YRI][hapmap]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94368000-94374200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:94368400-94374000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:94368400-94374000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:94370000-94374000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:94370600-94373800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:94370600-94374600	Enhancers	Placenta	Placenta
7	chr11:94370800-94373200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr11:94370800-94373200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:94371000-94372800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:94371000-94372800	Enhancers	Psoas Muscle	Psoas
11	chr11:94371000-94372800	Enhancers	HSMM	muscle
12	chr11:94371400-94372800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:94371400-94372800	Enhancers	Brain Angular Gyrus	brain
14	chr11:94371400-94372800	Enhancers	Brain Substantia Nigra	brain
15	chr11:94371400-94372800	Enhancers	Fetal Thymus	thymus
16	chr11:94371400-94373000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:94371600-94372800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr11:94371600-94373000	Enhancers	Brain Hippocampus Middle	brain
19	chr11:94371600-94373000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr11:94371600-94373400	Enhancers	NHEK	skin
21	chr11:94371800-94372800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:94371800-94372800	Enhancers	Fetal Muscle Leg	muscle
23	chr11:94371800-94373200	Flanking Active TSS	K562	blood
24	chr11:94371800-94374400	Enhancers	H9 Cell Line	embryonic stem cell
25	chr11:94372000-94372800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:94372000-94372800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:94372200-94373000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr11:94372200-94373000	Enhancers	HSMMtube	muscle
29	chr11:94372200-94373200	Enhancers	Spleen	Spleen
30	chr11:94372200-94374800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:94372200-94374800	Enhancers	Right Atrium	heart
32	chr11:94372400-94372800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:94372400-94372800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:94372400-94372800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:94372400-94372800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:94372400-94372800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr11:94372400-94372800	Enhancers	NHDF-Ad	bronchial
38	chr11:94372400-94372800	Enhancers	Osteobl	bone
39	chr11:94372400-94373000	Enhancers	Liver	Liver
40	chr11:94372400-94373000	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr11:94372400-94373200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:94372400-94373200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:94372400-94373200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr11:94372400-94373200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:94372400-94373200	Enhancers	Left Ventricle	heart
46	chr11:94372400-94373200	Enhancers	Lung	lung
47	chr11:94372400-94373200	Enhancers	HMEC	breast
48	chr11:94372400-94373400	Enhancers	Primary B cells from cord blood	blood
49	chr11:94372600-94372800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:94372600-94372800	Enhancers	Brain Anterior Caudate	brain

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