Variant report

Variant	rs4391779
Chromosome Location	chr11:94374502-94374503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:94374460-94374657	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000255666	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11020848	1.00[CEU][hapmap]
rs12280509	0.93[EUR][1000 genomes]
rs12804365	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16920716	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1939137	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4396252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4445593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4497362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs513811	0.93[EUR][1000 genomes]
rs56927653	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56984061	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57878936	0.93[EUR][1000 genomes]
rs60268618	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61228487	0.82[AFR][1000 genomes]
rs61433612	0.93[EUR][1000 genomes]
rs7119735	1.00[CEU][hapmap]
rs7130459	0.90[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94370600-94374600	Enhancers	Placenta	Placenta
2	chr11:94372200-94374800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:94372200-94374800	Enhancers	Right Atrium	heart
4	chr11:94372600-94374800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr11:94372800-94381200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:94373800-94374800	Enhancers	Adipose Nuclei	Adipose
7	chr11:94374000-94374600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr11:94374000-94374600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:94374000-94374800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:94374000-94374800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr11:94374000-94374800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:94374000-94374800	Enhancers	Fetal Thymus	thymus
13	chr11:94374200-94374600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr11:94374200-94374600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:94374200-94374600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:94374200-94374600	Enhancers	Brain Anterior Caudate	brain
17	chr11:94374200-94374600	Enhancers	Fetal Muscle Leg	muscle
18	chr11:94374200-94374600	Enhancers	Left Ventricle	heart
19	chr11:94374200-94374600	Enhancers	Spleen	Spleen
20	chr11:94374200-94374800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr11:94374200-94374800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:94374200-94374800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr11:94374200-94375000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:94374400-94374600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
25	chr11:94374400-94374600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:94374400-94374600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr11:94374400-94374600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:94374400-94374600	Enhancers	Brain Angular Gyrus	brain
29	chr11:94374400-94374600	Enhancers	Brain Cingulate Gyrus	brain
30	chr11:94374400-94374600	Enhancers	Brain Hippocampus Middle	brain
31	chr11:94374400-94374600	Enhancers	Esophagus	oesophagus
32	chr11:94374400-94374600	Enhancers	Right Ventricle	heart
33	chr11:94374400-94374600	Enhancers	HSMMtube	muscle
34	chr11:94374400-94374800	Enhancers	Fetal Muscle Trunk	muscle
35	chr11:94374400-94374800	Enhancers	K562	blood
36	chr11:94374400-94377800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr11:94374400-94380600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links