Variant report

Variant	rs56927653
Chromosome Location	chr11:94364707-94364708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12280509	1.00[EUR][1000 genomes]
rs12804365	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16920716	1.00[EUR][1000 genomes]
rs1939137	1.00[EUR][1000 genomes]
rs4391779	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4396252	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4445593	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4497362	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs513811	1.00[EUR][1000 genomes]
rs56984061	0.87[EUR][1000 genomes]
rs57878936	1.00[EUR][1000 genomes]
rs60268618	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61228487	0.85[EUR][1000 genomes]
rs61433612	1.00[EUR][1000 genomes]
rs7130459	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519248	chr11:94364361-94367296	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv521986	chr11:94364361-94369205	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94359800-94368200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:94363200-94367400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:94363600-94368200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:94363800-94368000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:94363800-94368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:94363800-94371800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:94364200-94369200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:94364400-94368000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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