Variant report

Variant	rs11020848
Chromosome Location	chr11:94325963-94325964
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94324831..94328074-chr11:94329918..94333130,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10437563	0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10831247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831248	0.87[ASN][1000 genomes]
rs10831249	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11020827	1.00[TSI][hapmap]
rs11824670	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12804365	1.00[CEU][hapmap]
rs16920716	1.00[CEU][hapmap]
rs1939137	1.00[CEU][hapmap]
rs34043801	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4391779	1.00[CEU][hapmap]
rs4396252	1.00[CEU][hapmap]
rs4445593	1.00[CEU][hapmap]
rs4497362	1.00[CEU][hapmap]
rs7105507	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107978	1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7119735	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938671	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
2	chr11:94308200-94342800	Weak transcription	K562	blood
3	chr11:94308600-94335400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:94309200-94342600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:94315200-94326000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:94316200-94328400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:94317600-94333600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:94317600-94335800	Weak transcription	Primary B cells from cord blood	blood
9	chr11:94317600-94335800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:94317600-94336200	Weak transcription	Esophagus	oesophagus
11	chr11:94318000-94335800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:94318400-94328000	Weak transcription	GM12878-XiMat	blood
13	chr11:94320200-94326400	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr11:94320400-94326000	Weak transcription	Brain Substantia Nigra	brain
15	chr11:94320600-94326000	Weak transcription	NHDF-Ad	bronchial
16	chr11:94320600-94333400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:94321000-94331400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:94321000-94334800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:94321000-94336400	Weak transcription	Small Intestine	intestine
20	chr11:94321000-94344800	Weak transcription	Lung	lung
21	chr11:94321400-94342600	Weak transcription	Fetal Brain Female	brain
22	chr11:94322200-94329400	Strong transcription	Duodenum Mucosa	Duodenum
23	chr11:94322200-94330800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:94322200-94343600	Weak transcription	Psoas Muscle	Psoas
25	chr11:94322600-94341600	Weak transcription	Right Ventricle	heart
26	chr11:94322800-94340800	Weak transcription	Colonic Mucosa	Colon
27	chr11:94323000-94341000	Weak transcription	Gastric	stomach
28	chr11:94323200-94328400	Weak transcription	Placenta	Placenta
29	chr11:94323200-94335200	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:94323600-94351800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:94324400-94326800	Weak transcription	Fetal Stomach	stomach
32	chr11:94324400-94335000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:94324600-94326800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:94324600-94328200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:94324600-94328400	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:94324600-94328400	Weak transcription	Pancreas	Pancrea
37	chr11:94324600-94332600	Weak transcription	Aorta	Aorta
38	chr11:94324600-94332600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr11:94324600-94333000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:94324600-94343600	Weak transcription	Spleen	Spleen
41	chr11:94324800-94326800	Weak transcription	Fetal Intestine Small	intestine
42	chr11:94324800-94328200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:94324800-94328400	Weak transcription	Adipose Nuclei	Adipose
44	chr11:94324800-94328400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:94324800-94330000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:94324800-94336000	Weak transcription	Brain Anterior Caudate	brain
47	chr11:94324800-94341000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:94325000-94328200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr11:94325000-94341000	Weak transcription	Ovary	ovary
50	chr11:94325000-94344400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links