Variant report

Variant	rs505416
Chromosome Location	chr11:106087461-106087462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10895935	0.83[EUR][1000 genomes]
rs12273190	0.84[EUR][1000 genomes]
rs12290323	0.84[EUR][1000 genomes]
rs12421469	0.84[EUR][1000 genomes]
rs12421840	0.84[EUR][1000 genomes]
rs1262373	0.84[EUR][1000 genomes]
rs1893856	0.84[EUR][1000 genomes]
rs1944770	0.84[EUR][1000 genomes]
rs483873	0.84[EUR][1000 genomes]
rs485681	0.84[EUR][1000 genomes]
rs531851	0.84[EUR][1000 genomes]
rs565672	0.84[EUR][1000 genomes]
rs602407	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs617143	0.81[EUR][1000 genomes]
rs633534	0.84[EUR][1000 genomes]
rs657786	0.84[EUR][1000 genomes]
rs7127780	0.84[EUR][1000 genomes]
rs7131594	0.83[EUR][1000 genomes]
rs726349	0.84[EUR][1000 genomes]
rs72987177	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv826073	chr11:106064382-106122340	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106086600-106087600	Enhancers	Fetal Intestine Small	intestine
2	chr11:106086600-106089400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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