Variant report

Variant	rs10895935
Chromosome Location	chr11:106102188-106102189
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10502066	0.85[LWK][hapmap]
rs10750747	0.82[ASN][1000 genomes]
rs10750748	0.81[ASN][1000 genomes]
rs10750749	0.81[ASN][1000 genomes]
rs10750750	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10791788	0.82[ASN][1000 genomes]
rs10791789	0.81[ASN][1000 genomes]
rs10791791	0.81[ASN][1000 genomes]
rs10791792	0.81[ASN][1000 genomes]
rs10791794	0.81[ASN][1000 genomes]
rs10791795	0.83[ASN][1000 genomes]
rs10791796	0.83[ASN][1000 genomes]
rs10791797	0.83[ASN][1000 genomes]
rs10791798	0.87[ASN][1000 genomes]
rs10791799	0.87[ASN][1000 genomes]
rs10791800	0.89[ASN][1000 genomes]
rs10791802	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs10895923	0.82[ASN][1000 genomes]
rs10895924	0.81[ASN][1000 genomes]
rs10895925	0.81[ASN][1000 genomes]
rs10895926	0.81[ASN][1000 genomes]
rs10895928	0.81[ASN][1000 genomes]
rs10895929	0.81[ASN][1000 genomes]
rs10895930	0.81[ASN][1000 genomes]
rs10895931	0.82[ASN][1000 genomes]
rs10895932	0.83[ASN][1000 genomes]
rs10895938	0.83[ASN][1000 genomes]
rs11226947	0.82[ASN][1000 genomes]
rs11226975	0.85[LWK][hapmap]
rs11226982	0.82[ASN][1000 genomes]
rs12225407	0.92[ASN][1000 genomes]
rs12273190	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12276977	0.83[EUR][1000 genomes]
rs12283696	0.88[EUR][1000 genomes]
rs12290323	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12291279	0.88[EUR][1000 genomes]
rs12294538	0.83[EUR][1000 genomes]
rs12421469	0.96[EUR][1000 genomes]
rs12421840	0.96[EUR][1000 genomes]
rs1262373	0.99[EUR][1000 genomes]
rs1354986	0.87[ASN][1000 genomes]
rs1396153	0.90[ASN][1000 genomes]
rs1396156	1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs1508148	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1605565	0.86[EUR][1000 genomes]
rs1605566	0.92[ASN][1000 genomes]
rs1605567	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs1806481	1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs1828126	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1893172	0.90[ASN][1000 genomes]
rs1893854	0.83[ASN][1000 genomes]
rs1893855	0.83[ASN][1000 genomes]
rs1893856	0.96[EUR][1000 genomes]
rs1893857	0.83[ASN][1000 genomes]
rs1940761	0.83[EUR][1000 genomes]
rs1940765	0.82[ASN][1000 genomes]
rs1940766	0.81[ASN][1000 genomes]
rs1940767	0.81[ASN][1000 genomes]
rs1940777	0.83[ASN][1000 genomes]
rs1940778	0.83[ASN][1000 genomes]
rs1940779	0.83[ASN][1000 genomes]
rs1940780	0.83[ASN][1000 genomes]
rs1940782	0.83[ASN][1000 genomes]
rs1940783	0.83[ASN][1000 genomes]
rs1944770	0.96[EUR][1000 genomes]
rs1944772	0.83[ASN][1000 genomes]
rs1944774	0.87[ASN][1000 genomes]
rs1944775	0.87[ASN][1000 genomes]
rs2155649	0.81[ASN][1000 genomes]
rs2155650	0.82[ASN][1000 genomes]
rs2155652	0.83[ASN][1000 genomes]
rs2155653	0.83[ASN][1000 genomes]
rs2186880	0.81[ASN][1000 genomes]
rs4237621	0.83[ASN][1000 genomes]
rs4310571	0.82[ASN][1000 genomes]
rs4365018	0.82[ASN][1000 genomes]
rs4373882	0.81[ASN][1000 genomes]
rs4431993	0.82[ASN][1000 genomes]
rs4475893	0.89[ASN][1000 genomes]
rs4488166	0.82[ASN][1000 genomes]
rs4508178	0.80[ASN][1000 genomes]
rs4512783	0.81[ASN][1000 genomes]
rs4512788	0.82[ASN][1000 genomes]
rs4558141	0.83[ASN][1000 genomes]
rs4559652	0.81[ASN][1000 genomes]
rs4614415	0.88[EUR][1000 genomes]
rs4754151	0.82[ASN][1000 genomes]
rs4755129	0.81[ASN][1000 genomes]
rs4755134	0.81[ASN][1000 genomes]
rs4755137	0.82[ASN][1000 genomes]
rs4755138	0.82[ASN][1000 genomes]
rs4755140	0.83[ASN][1000 genomes]
rs4755146	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs483873	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs485681	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs488212	0.93[EUR][1000 genomes]
rs5019762	0.89[ASN][1000 genomes]
rs505416	0.83[EUR][1000 genomes]
rs531851	0.99[EUR][1000 genomes]
rs542358	0.93[EUR][1000 genomes]
rs565672	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs594050	0.85[EUR][1000 genomes]
rs602407	1.00[CEU][hapmap];0.86[CHB][hapmap];0.99[EUR][1000 genomes]
rs617143	0.95[EUR][1000 genomes]
rs633534	0.99[EUR][1000 genomes]
rs657786	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs660647	0.93[EUR][1000 genomes]
rs667501	0.91[EUR][1000 genomes]
rs674799	0.85[CEU][hapmap]
rs7106919	0.85[LWK][hapmap]
rs7110907	0.83[ASN][1000 genomes]
rs7117968	0.86[ASN][1000 genomes]
rs7119670	0.85[LWK][hapmap]
rs7120502	0.83[EUR][1000 genomes]
rs7126900	0.85[LWK][hapmap]
rs7127780	0.96[EUR][1000 genomes]
rs7131594	0.95[EUR][1000 genomes]
rs718154	0.90[ASN][1000 genomes]
rs726349	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72985182	0.88[EUR][1000 genomes]
rs72987177	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv826073	chr11:106064382-106122340	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2755584	chr11:106092790-106120790	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3329592	chr11:106092791-106113345	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106100800-106102200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links