Variant report
| Variant | rs674799 |
|---|---|
| Chromosome Location | chr11:106178660-106178661 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10750750 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10791802 | 0.87[CHB][hapmap] |
| rs1268739 | 0.98[ASN][1000 genomes] |
| rs1605565 | 0.84[EUR][1000 genomes] |
| rs1955018 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2409624 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3018017 | 0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3018019 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4755146 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs488212 | 0.87[ASN][1000 genomes] |
| rs542358 | 0.89[ASN][1000 genomes] |
| rs584889 | 0.92[ASN][1000 genomes] |
| rs594050 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs602407 | 0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs613928 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs617143 | 0.88[ASN][1000 genomes] |
| rs660647 | 0.89[ASN][1000 genomes] |
| rs667501 | 0.89[ASN][1000 genomes] |
| rs675319 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs687908 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048381 | chr11:105945117-106561574 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv898358 | chr11:105999580-106182251 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv2754854 | chr11:106092790-106245790 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1054471 | chr11:106168484-106427713 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106175600-106181800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
