Variant report

Variant	rs3018017
Chromosome Location	chr11:106188019-106188020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10750750	0.84[EUR][1000 genomes]
rs1268739	0.92[ASN][1000 genomes]
rs1955018	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2409624	0.85[EUR][1000 genomes]
rs3018019	0.84[ASN][1000 genomes]
rs4755146	0.84[EUR][1000 genomes]
rs488212	0.82[ASN][1000 genomes]
rs542358	0.84[ASN][1000 genomes]
rs584889	0.86[ASN][1000 genomes]
rs594050	0.90[ASN][1000 genomes]
rs613928	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs617143	0.83[ASN][1000 genomes]
rs660647	0.84[ASN][1000 genomes]
rs667501	0.84[ASN][1000 genomes]
rs674799	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs675319	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs687908	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054471	chr11:106168484-106427713	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106183200-106189200	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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