Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10750750	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10791802	0.84[CHB][hapmap]
rs1268739	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1605565	0.84[EUR][1000 genomes]
rs2409624	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3018017	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3018019	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4755146	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs488212	0.87[ASN][1000 genomes]
rs542358	0.89[ASN][1000 genomes]
rs584889	0.92[ASN][1000 genomes]
rs594050	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs602407	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs613928	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs617143	0.88[ASN][1000 genomes]
rs660647	0.89[ASN][1000 genomes]
rs667501	0.89[ASN][1000 genomes]
rs674799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675319	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs687908	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054471	chr11:106168484-106427713	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106190600-106197600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:106191000-106197200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:106191600-106196600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: