Variant report

Variant	rs1605565
Chromosome Location	chr11:106167398-106167399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KBTBD3-4	chr11:106167080-106167504	NONHSAT023984

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10750750	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10791801	0.90[ASN][1000 genomes]
rs10791802	0.88[ASN][1000 genomes]
rs10895935	0.86[EUR][1000 genomes]
rs10895938	0.82[ASN][1000 genomes]
rs11226987	0.85[ASN][1000 genomes]
rs12273190	0.83[EUR][1000 genomes]
rs12290323	0.83[EUR][1000 genomes]
rs12421469	0.83[EUR][1000 genomes]
rs12421840	0.83[EUR][1000 genomes]
rs1262373	0.85[EUR][1000 genomes]
rs1508148	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1828126	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1893856	0.83[EUR][1000 genomes]
rs1944770	0.83[EUR][1000 genomes]
rs1955018	0.84[EUR][1000 genomes]
rs2409624	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755146	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs483873	0.83[EUR][1000 genomes]
rs485681	0.83[EUR][1000 genomes]
rs488212	0.91[EUR][1000 genomes]
rs531851	0.85[EUR][1000 genomes]
rs542358	0.91[EUR][1000 genomes]
rs565672	0.83[EUR][1000 genomes]
rs594050	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs602407	0.85[EUR][1000 genomes]
rs613928	0.84[EUR][1000 genomes]
rs617143	0.88[EUR][1000 genomes]
rs633534	0.85[EUR][1000 genomes]
rs657786	0.85[EUR][1000 genomes]
rs660647	0.91[EUR][1000 genomes]
rs667501	0.88[EUR][1000 genomes]
rs674799	0.84[EUR][1000 genomes]
rs675319	0.85[EUR][1000 genomes]
rs687908	0.84[EUR][1000 genomes]
rs7126969	0.90[ASN][1000 genomes]
rs7127780	0.83[EUR][1000 genomes]
rs7131594	0.82[EUR][1000 genomes]
rs726349	0.83[EUR][1000 genomes]
rs72987177	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3343569	chr11:106166637-106170480	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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