Variant report

Variant	rs10791801
Chromosome Location	chr11:106176289-106176290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:106176133-106176481	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000255065	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10750750	0.92[ASN][1000 genomes]
rs10750753	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10750754	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10791795	0.81[EUR][1000 genomes]
rs10791796	0.81[EUR][1000 genomes]
rs10791797	0.81[EUR][1000 genomes]
rs10791798	0.82[EUR][1000 genomes]
rs10791799	0.82[EUR][1000 genomes]
rs10791800	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10791802	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895921	0.81[EUR][1000 genomes]
rs10895922	0.81[EUR][1000 genomes]
rs10895932	0.81[EUR][1000 genomes]
rs10895938	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11226982	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11226987	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12225407	0.84[EUR][1000 genomes]
rs1354986	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1396153	0.83[EUR][1000 genomes]
rs1396156	0.86[EUR][1000 genomes]
rs1396159	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1396160	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1508148	0.80[ASN][1000 genomes]
rs1605565	0.90[ASN][1000 genomes]
rs1605566	0.85[EUR][1000 genomes]
rs1605567	0.86[EUR][1000 genomes]
rs1806481	0.86[EUR][1000 genomes]
rs1828126	0.80[ASN][1000 genomes]
rs1893172	0.83[EUR][1000 genomes]
rs1893854	0.81[EUR][1000 genomes]
rs1893855	0.81[EUR][1000 genomes]
rs1893857	0.81[EUR][1000 genomes]
rs1940777	0.81[EUR][1000 genomes]
rs1940778	0.81[EUR][1000 genomes]
rs1940779	0.81[EUR][1000 genomes]
rs1940780	0.81[EUR][1000 genomes]
rs1940782	0.81[EUR][1000 genomes]
rs1940783	0.81[EUR][1000 genomes]
rs1944772	0.81[EUR][1000 genomes]
rs1944774	0.81[EUR][1000 genomes]
rs1944775	0.81[EUR][1000 genomes]
rs2155652	0.81[EUR][1000 genomes]
rs2155653	0.81[EUR][1000 genomes]
rs2409624	0.92[ASN][1000 genomes]
rs4237621	0.81[EUR][1000 genomes]
rs4475893	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4558141	0.81[EUR][1000 genomes]
rs4755140	0.80[EUR][1000 genomes]
rs4755146	0.92[ASN][1000 genomes]
rs5019762	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs584889	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7110907	0.81[EUR][1000 genomes]
rs7117968	0.83[EUR][1000 genomes]
rs7126969	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718154	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1054471	chr11:106168484-106427713	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10791801	AASDHPPT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106175000-106177000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr11:106175600-106181800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:106175800-106176800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:106176000-106176600	Enhancers	Esophagus	oesophagus
5	chr11:106176000-106176600	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links