Variant report

Variant	rs11226987
Chromosome Location	chr11:106153996-106153997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10736649	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10750742	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10750743	0.82[EUR][1000 genomes]
rs10750744	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10750745	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10750747	0.86[EUR][1000 genomes]
rs10750748	0.86[EUR][1000 genomes]
rs10750749	0.86[EUR][1000 genomes]
rs10750750	0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs10750753	0.82[ASN][1000 genomes]
rs10750754	0.82[ASN][1000 genomes]
rs10791783	0.83[EUR][1000 genomes]
rs10791784	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10791785	0.83[EUR][1000 genomes]
rs10791787	0.83[EUR][1000 genomes]
rs10791788	0.86[EUR][1000 genomes]
rs10791789	0.86[EUR][1000 genomes]
rs10791790	0.85[EUR][1000 genomes]
rs10791791	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10791792	0.86[EUR][1000 genomes]
rs10791793	0.86[EUR][1000 genomes]
rs10791794	0.86[EUR][1000 genomes]
rs10791795	0.88[EUR][1000 genomes]
rs10791796	0.88[EUR][1000 genomes]
rs10791797	0.88[EUR][1000 genomes]
rs10791798	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10791799	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10791800	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10791801	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10791802	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10895912	0.81[EUR][1000 genomes]
rs10895913	0.81[EUR][1000 genomes]
rs10895914	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10895915	0.83[EUR][1000 genomes]
rs10895917	0.83[EUR][1000 genomes]
rs10895918	0.83[EUR][1000 genomes]
rs10895921	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10895922	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10895923	0.86[EUR][1000 genomes]
rs10895924	0.86[EUR][1000 genomes]
rs10895925	0.86[EUR][1000 genomes]
rs10895926	0.86[EUR][1000 genomes]
rs10895928	0.86[EUR][1000 genomes]
rs10895929	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10895930	0.86[EUR][1000 genomes]
rs10895931	0.86[EUR][1000 genomes]
rs10895932	0.88[EUR][1000 genomes]
rs10895938	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226939	0.81[AFR][1000 genomes]
rs11226941	0.82[EUR][1000 genomes]
rs11226942	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11226946	0.83[AFR][1000 genomes]
rs11226947	0.86[EUR][1000 genomes]
rs11226982	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12225407	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1354986	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1359144	0.83[EUR][1000 genomes]
rs1396153	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1396156	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1396159	0.82[ASN][1000 genomes]
rs1396160	0.82[ASN][1000 genomes]
rs1508148	0.90[ASN][1000 genomes]
rs1605565	0.85[ASN][1000 genomes]
rs1605566	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1605567	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1806481	0.92[ASW][hapmap];0.94[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1828126	0.90[ASN][1000 genomes]
rs1893171	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1893172	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1893854	0.88[EUR][1000 genomes]
rs1893855	0.88[EUR][1000 genomes]
rs1893857	0.88[EUR][1000 genomes]
rs1940756	0.83[EUR][1000 genomes]
rs1940758	0.81[EUR][1000 genomes]
rs1940759	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1940760	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1940765	0.86[EUR][1000 genomes]
rs1940766	0.86[EUR][1000 genomes]
rs1940767	0.86[EUR][1000 genomes]
rs1940777	0.88[EUR][1000 genomes]
rs1940778	0.88[EUR][1000 genomes]
rs1940779	0.87[EUR][1000 genomes]
rs1940780	0.88[EUR][1000 genomes]
rs1940782	0.88[EUR][1000 genomes]
rs1940783	0.88[EUR][1000 genomes]
rs1940785	0.83[EUR][1000 genomes]
rs1940786	0.83[EUR][1000 genomes]
rs1940787	0.83[EUR][1000 genomes]
rs1944772	0.88[EUR][1000 genomes]
rs1944774	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1944775	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2096833	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2155649	0.86[EUR][1000 genomes]
rs2155650	0.86[EUR][1000 genomes]
rs2155652	0.88[EUR][1000 genomes]
rs2155653	0.88[EUR][1000 genomes]
rs2186880	0.86[EUR][1000 genomes]
rs2409624	0.83[ASN][1000 genomes]
rs4237619	0.83[EUR][1000 genomes]
rs4237620	0.83[EUR][1000 genomes]
rs4237621	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4298866	0.83[EUR][1000 genomes]
rs4310571	0.86[EUR][1000 genomes]
rs4365018	0.86[EUR][1000 genomes]
rs4366457	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4373882	0.86[EUR][1000 genomes]
rs4431993	0.86[EUR][1000 genomes]
rs4475893	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4477412	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4486594	0.80[EUR][1000 genomes]
rs4488166	0.86[EUR][1000 genomes]
rs4505036	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4505037	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4506615	0.83[EUR][1000 genomes]
rs4508178	0.86[EUR][1000 genomes]
rs4512783	0.86[EUR][1000 genomes]
rs4512788	0.86[EUR][1000 genomes]
rs4514384	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4529863	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4558141	0.88[EUR][1000 genomes]
rs4559652	0.86[EUR][1000 genomes]
rs4754146	0.83[EUR][1000 genomes]
rs4754147	0.83[EUR][1000 genomes]
rs4754148	0.83[EUR][1000 genomes]
rs4754151	0.86[EUR][1000 genomes]
rs4755127	0.83[EUR][1000 genomes]
rs4755128	0.83[EUR][1000 genomes]
rs4755129	0.86[EUR][1000 genomes]
rs4755130	0.86[EUR][1000 genomes]
rs4755134	0.86[EUR][1000 genomes]
rs4755137	0.86[EUR][1000 genomes]
rs4755138	0.86[EUR][1000 genomes]
rs4755140	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4755146	0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs5019762	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs584889	0.83[EUR][1000 genomes]
rs674799	0.82[CHB][hapmap]
rs7110907	0.88[EUR][1000 genomes]
rs7112436	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7115529	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7117968	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7126969	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs718154	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72983129	0.82[EUR][1000 genomes]
rs7934227	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7943598	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11226987	AASDHPPT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106152800-106157800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:106152800-106158800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:106153200-106157200	Weak transcription	NHDF-Ad	bronchial

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