Variant report
| Variant | rs10791802 |
|---|---|
| Chromosome Location | chr11:106177959-106177960 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:39)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:39 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| ENSG00000255065 | TF binding region |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10750750 | 1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs10750753 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10750754 | 0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10791800 | 0.80[ASN][1000 genomes] |
| rs10791801 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10895929 | 0.83[AFR][1000 genomes] |
| rs10895938 | 0.84[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11226946 | 0.80[AFR][1000 genomes] |
| rs11226982 | 0.82[ASN][1000 genomes] |
| rs11226987 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12225407 | 0.83[AFR][1000 genomes] |
| rs1354986 | 0.84[AFR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1396156 | 0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs1396159 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1396160 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1605565 | 0.88[ASN][1000 genomes] |
| rs1605567 | 0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs1806481 | 0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs2409624 | 0.91[ASN][1000 genomes] |
| rs4237621 | 0.83[AFR][1000 genomes] |
| rs4475893 | 0.80[ASN][1000 genomes] |
| rs4755140 | 0.83[AFR][1000 genomes] |
| rs4755146 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs5019762 | 0.84[AFR][1000 genomes];0.80[ASN][1000 genomes] |
| rs584889 | 0.99[EUR][1000 genomes] |
| rs674799 | 0.87[CHB][hapmap] |
| rs7126969 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048381 | chr11:105945117-106561574 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv898358 | chr11:105999580-106182251 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv2754854 | chr11:106092790-106245790 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1054471 | chr11:106168484-106427713 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10791802 | AASDHPPT | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106175600-106181800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
