Variant report

Variant	rs507001
Chromosome Location	chr11:102629432-102629433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17860955	1.00[AFR][1000 genomes]
rs17883832	1.00[AFR][1000 genomes]
rs1939007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1940464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2155053	1.00[GIH][hapmap];1.00[MKK][hapmap]
rs4600176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4754879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs488965	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs531335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6590990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs947873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102622800-102632400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:102623000-102632600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:102624200-102632400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:102624600-102632400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:102624800-102633600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:102628200-102629600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:102628200-102631400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:102628600-102629600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:102628600-102630000	Enhancers	HMEC	breast
10	chr11:102628600-102634800	Enhancers	HUVEC	blood vessel
11	chr11:102628600-102635400	Enhancers	NHEK	skin
12	chr11:102628800-102629600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:102628800-102630200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:102628800-102630200	Enhancers	Adipose Nuclei	Adipose
15	chr11:102629200-102630000	Enhancers	NHDF-Ad	bronchial
16	chr11:102629200-102630600	Weak transcription	NHLF	lung
17	chr11:102629200-102630800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:102629200-102630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:102629200-102632800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:102629400-102629600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr11:102629400-102630800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:102629400-102630800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:102629400-102630800	Weak transcription	A549	lung
24	chr11:102629400-102642200	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links