Variant report

Variant	rs531335
Chromosome Location	chr11:102623115-102623116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17860955	1.00[AFR][1000 genomes]
rs17883832	1.00[AFR][1000 genomes]
rs1939007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1940464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4600176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4754879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs488965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs507001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6590990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs947873	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102620600-102624000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:102620600-102624200	Weak transcription	NHEK	skin
3	chr11:102620600-102624400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:102620600-102628600	Weak transcription	HMEC	breast
5	chr11:102620600-102628800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:102622000-102623200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:102622000-102623200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:102622200-102623200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:102622200-102623400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:102622400-102623200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr11:102622400-102623400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:102622600-102623200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:102622800-102623400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr11:102622800-102623600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:102622800-102632400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:102623000-102632600	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links