Variant report

Variant	rs509944
Chromosome Location	chr11:100684309-100684310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs528494	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs540185	0.94[CEU][hapmap]
rs541931	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs546584	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs556146	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs586495	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs618291	0.93[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs622675	0.90[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs650867	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs678681	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100663000-100691800	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:100667200-100685200	Weak transcription	Primary B cells from cord blood	blood
3	chr11:100670000-100697400	Weak transcription	Placenta	Placenta
4	chr11:100673600-100687600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:100680200-100686200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:100680400-100687400	Weak transcription	Fetal Heart	heart
7	chr11:100680600-100687400	Weak transcription	Left Ventricle	heart
8	chr11:100680600-100689000	Weak transcription	Psoas Muscle	Psoas
9	chr11:100680600-100691800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:100680800-100687400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:100680800-100696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:100681000-100685800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:100681200-100698000	Weak transcription	Stomach Mucosa	stomach
14	chr11:100681400-100701000	Weak transcription	HSMM	muscle
15	chr11:100681800-100685200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:100682000-100687400	Weak transcription	NHEK	skin
17	chr11:100682000-100688400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:100684000-100691000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:100684000-100691800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:100684200-100688800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:100684200-100689000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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