Variant report

Variant	rs678681
Chromosome Location	chr11:100693234-100693235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100691211..100693446-chr11:100695155..100697505,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs509944	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs528494	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs541931	0.82[ASN][1000 genomes]
rs546584	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs556146	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586495	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs618291	0.88[ASN][1000 genomes]
rs622675	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs650867	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100670000-100697400	Weak transcription	Placenta	Placenta
2	chr11:100680800-100696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:100681200-100698000	Weak transcription	Stomach Mucosa	stomach
4	chr11:100681400-100701000	Weak transcription	HSMM	muscle
5	chr11:100685800-100693400	Weak transcription	Primary B cells from cord blood	blood
6	chr11:100686200-100702800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:100688000-100693600	Weak transcription	Left Ventricle	heart
8	chr11:100688000-100693600	Weak transcription	Right Atrium	heart
9	chr11:100688000-100698600	Weak transcription	NH-A	brain
10	chr11:100688000-100704000	Weak transcription	Right Ventricle	heart
11	chr11:100689000-100698600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:100689200-100698200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:100689400-100693400	Weak transcription	Psoas Muscle	Psoas
14	chr11:100689400-100694000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:100690400-100696400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:100690800-100697200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:100691200-100693400	Weak transcription	Fetal Heart	heart
18	chr11:100691800-100693800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:100691800-100696800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:100691800-100696800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:100692200-100693600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:100692200-100693800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:100692200-100696200	Weak transcription	HMEC	breast
24	chr11:100692200-100698000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:100692400-100693600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:100692400-100693600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:100692400-100693600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:100692400-100693600	Weak transcription	Brain Anterior Caudate	brain
29	chr11:100692400-100693600	Weak transcription	Fetal Kidney	kidney
30	chr11:100692400-100693600	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:100692400-100694000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:100692600-100693600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:100692600-100693600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:100692600-100693800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:100692600-100694000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr11:100692600-100694000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:100692600-100694400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:100692800-100693600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:100692800-100694800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:100692800-100696400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:100692800-100698200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:100693000-100693400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:100693000-100693600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:100693200-100693400	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr11:100693200-100694200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr11:100693200-100695200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:100693200-100695600	Enhancers	Adipose Nuclei	Adipose

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