Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs127600	0.91[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs197632	0.91[ASN][1000 genomes]
rs197635	0.95[ASN][1000 genomes]
rs197636	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs197637	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs197639	0.96[ASN][1000 genomes]
rs197640	0.96[ASN][1000 genomes]
rs197641	0.91[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs197642	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs2764661	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs552727	0.96[ASN][1000 genomes]
rs554689	0.87[EUR][1000 genomes]
rs565846	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs596784	1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs606497	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs626210	0.82[ASN][1000 genomes]
rs626212	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs657471	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6682379	0.91[ASN][1000 genomes]
rs706379	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57702200-57707400	Weak transcription	Fetal Intestine Large	intestine
2	chr1:57702200-57711800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:57705200-57712000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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