Variant report

Variant	rs6682379
Chromosome Location	chr1:57699089-57699090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs127600	0.90[ASN][1000 genomes]
rs197632	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197635	0.89[ASN][1000 genomes]
rs197636	0.89[ASN][1000 genomes]
rs197637	0.89[ASN][1000 genomes]
rs197639	0.90[ASN][1000 genomes]
rs197640	0.90[ASN][1000 genomes]
rs197641	0.90[ASN][1000 genomes]
rs197642	0.90[ASN][1000 genomes]
rs2764661	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs514350	0.91[ASN][1000 genomes]
rs552727	0.90[ASN][1000 genomes]
rs565846	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs606497	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs626210	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs657471	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706379	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57694000-57699800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57698200-57701400	Weak transcription	K562	blood
3	chr1:57698400-57699600	Weak transcription	Liver	Liver
4	chr1:57698400-57702200	Enhancers	Fetal Intestine Large	intestine
5	chr1:57698800-57699600	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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