Variant report

Variant	rs515552
Chromosome Location	chr11:100863096-100863097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs471933	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100848200-100866000	Weak transcription	Psoas Muscle	Psoas
2	chr11:100848400-100863200	Weak transcription	Fetal Intestine Large	intestine
3	chr11:100848400-100864600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:100848600-100863400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:100848600-100865200	Weak transcription	Left Ventricle	heart
6	chr11:100848600-100865800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:100848800-100864800	Weak transcription	HSMM	muscle
8	chr11:100849200-100867400	Weak transcription	Fetal Lung	lung
9	chr11:100850600-100864600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:100851000-100870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:100857400-100864600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:100857600-100870400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:100858600-100865600	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:100858600-100870400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:100860000-100864600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:100861600-100864000	Enhancers	Primary T cells from cord blood	blood
17	chr11:100861800-100866000	Weak transcription	HSMMtube	muscle
18	chr11:100862000-100863800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:100862400-100865600	Weak transcription	Placenta	Placenta
20	chr11:100862400-100866800	Weak transcription	Fetal Heart	heart
21	chr11:100862600-100863800	Weak transcription	Aorta	Aorta
22	chr11:100862600-100864200	Weak transcription	Adipose Nuclei	Adipose
23	chr11:100862600-100864400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:100862600-100865000	Weak transcription	Liver	Liver
25	chr11:100863000-100863400	Enhancers	Fetal Thymus	thymus

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