Variant report

Variant	rs471933
Chromosome Location	chr11:100863354-100863355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10488785	0.87[CEU][hapmap]
rs10791440	0.92[MEX][hapmap]
rs11224526	0.82[CHB][hapmap]
rs12417367	0.90[CHB][hapmap]
rs17654386	1.00[CHB][hapmap]
rs2509107	0.85[CEU][hapmap]
rs3740749	1.00[YRI][hapmap]
rs4754715	0.87[CEU][hapmap]
rs488365	0.94[CHB][hapmap]
rs507858	0.91[MEX][hapmap]
rs515552	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs516873	0.83[CHB][hapmap]
rs533384	0.92[MEX][hapmap]
rs540866	0.92[MEX][hapmap]
rs551632	0.83[GIH][hapmap];0.83[TSI][hapmap]
rs552490	0.87[MEX][hapmap]
rs568618	0.81[CHB][hapmap]
rs575734	0.91[MEX][hapmap]
rs612046	0.87[CEU][hapmap]
rs629813	0.82[CEU][hapmap]
rs640326	0.87[MEX][hapmap]
rs651301	0.94[CEU][hapmap]
rs664212	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100848200-100866000	Weak transcription	Psoas Muscle	Psoas
2	chr11:100848400-100864600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:100848600-100863400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:100848600-100865200	Weak transcription	Left Ventricle	heart
5	chr11:100848600-100865800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:100848800-100864800	Weak transcription	HSMM	muscle
7	chr11:100849200-100867400	Weak transcription	Fetal Lung	lung
8	chr11:100850600-100864600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:100851000-100870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:100857400-100864600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:100857600-100870400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:100858600-100865600	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:100858600-100870400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:100860000-100864600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:100861600-100864000	Enhancers	Primary T cells from cord blood	blood
16	chr11:100861800-100866000	Weak transcription	HSMMtube	muscle
17	chr11:100862000-100863800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:100862400-100865600	Weak transcription	Placenta	Placenta
19	chr11:100862400-100866800	Weak transcription	Fetal Heart	heart
20	chr11:100862600-100863800	Weak transcription	Aorta	Aorta
21	chr11:100862600-100864200	Weak transcription	Adipose Nuclei	Adipose
22	chr11:100862600-100864400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:100862600-100865000	Weak transcription	Liver	Liver
24	chr11:100863000-100863400	Enhancers	Fetal Thymus	thymus

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