Variant report

Variant	rs17654386
Chromosome Location	chr11:100863814-100863815
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1047624	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10501968	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11224526	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11224530	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12273212	1.00[YRI][hapmap]
rs12283290	0.82[CEU][hapmap]
rs12286931	1.00[YRI][hapmap]
rs12417367	0.82[CHB][hapmap]
rs12419257	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12420167	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17095808	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17095820	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17095829	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17648695	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17654410	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17654633	1.00[AFR][1000 genomes]
rs17727449	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17727789	1.00[AFR][1000 genomes]
rs17727843	1.00[AFR][1000 genomes]
rs17727873	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1944433	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1944434	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2155444	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2155445	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2186785	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2186786	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs471933	1.00[CHB][hapmap]
rs488365	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs57502383	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs575473	0.90[ASN][1000 genomes]
rs61995873	0.96[ASN][1000 genomes]
rs7114062	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7949497	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100848200-100866000	Weak transcription	Psoas Muscle	Psoas
2	chr11:100848400-100864600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:100848600-100865200	Weak transcription	Left Ventricle	heart
4	chr11:100848600-100865800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:100848800-100864800	Weak transcription	HSMM	muscle
6	chr11:100849200-100867400	Weak transcription	Fetal Lung	lung
7	chr11:100850600-100864600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:100851000-100870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:100857400-100864600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:100857600-100870400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:100858600-100865600	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:100858600-100870400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:100860000-100864600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:100861600-100864000	Enhancers	Primary T cells from cord blood	blood
15	chr11:100861800-100866000	Weak transcription	HSMMtube	muscle
16	chr11:100862400-100865600	Weak transcription	Placenta	Placenta
17	chr11:100862400-100866800	Weak transcription	Fetal Heart	heart
18	chr11:100862600-100864200	Weak transcription	Adipose Nuclei	Adipose
19	chr11:100862600-100864400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:100862600-100865000	Weak transcription	Liver	Liver
21	chr11:100863800-100864000	Enhancers	Aorta	Aorta

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