Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100856345..100859552-chr11:100865744..100869877,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10501968	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11224526	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11224530	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12283290	0.81[CEU][hapmap]
rs12417367	0.82[CHB][hapmap]
rs12419257	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12420167	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17095808	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17095820	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17095829	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17654386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1944433	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1944434	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2155444	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs2155445	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2186785	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs2186786	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs471933	1.00[CHB][hapmap]
rs488365	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs57502383	0.85[EUR][1000 genomes]
rs575473	0.92[ASN][1000 genomes]
rs61995873	0.98[ASN][1000 genomes]
rs7114062	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100849200-100867400	Weak transcription	Fetal Lung	lung
2	chr11:100851000-100870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:100857600-100870400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:100858600-100870400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:100864000-100867800	Weak transcription	Aorta	Aorta
6	chr11:100866800-100867600	Enhancers	Fetal Heart	heart

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