Variant report

Variant	rs12420167
Chromosome Location	chr11:100864744-100864745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10501968	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes]
rs11224526	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs11224530	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12283290	0.81[CEU][hapmap]
rs12417367	0.90[CHB][hapmap]
rs12419257	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17095808	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17095820	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17095829	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes]
rs17654386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17727873	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1944433	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes]
rs1944434	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes]
rs2155444	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs2155445	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2186785	0.81[CEU][hapmap];0.91[EUR][1000 genomes]
rs2186786	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs471933	1.00[CHB][hapmap]
rs488365	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs516873	0.83[CHB][hapmap]
rs568618	0.81[CHB][hapmap]
rs57502383	0.91[EUR][1000 genomes]
rs575473	0.94[ASN][1000 genomes]
rs61995873	1.00[ASN][1000 genomes]
rs7114062	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100848200-100866000	Weak transcription	Psoas Muscle	Psoas
2	chr11:100848600-100865200	Weak transcription	Left Ventricle	heart
3	chr11:100848600-100865800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:100848800-100864800	Weak transcription	HSMM	muscle
5	chr11:100849200-100867400	Weak transcription	Fetal Lung	lung
6	chr11:100851000-100870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:100857600-100870400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:100858600-100865600	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:100858600-100870400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:100861800-100866000	Weak transcription	HSMMtube	muscle
11	chr11:100862400-100865600	Weak transcription	Placenta	Placenta
12	chr11:100862400-100866800	Weak transcription	Fetal Heart	heart
13	chr11:100862600-100865000	Weak transcription	Liver	Liver
14	chr11:100864000-100867800	Weak transcription	Aorta	Aorta
15	chr11:100864400-100865200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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