Variant report

Variant	rs17727843
Chromosome Location	chr11:100865197-100865198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1047624	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11224511	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11224517	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224518	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11224519	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224520	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224528	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224529	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12273212	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs12276190	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12281543	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12283290	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs12285336	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12286700	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12286931	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12290272	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12417750	0.95[EUR][1000 genomes]
rs17646129	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17646702	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17647068	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs17647243	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17648451	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs17648695	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17654386	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17654410	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17654633	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17659845	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17713573	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17726649	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17726667	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17726715	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17726918	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17727251	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17727449	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17727789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1940220	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1940222	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1944435	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2226640	0.99[EUR][1000 genomes]
rs41392445	1.00[CEU][hapmap]
rs55952345	0.97[EUR][1000 genomes]
rs56199820	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60312663	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7924400	0.88[EUR][1000 genomes]
rs7948907	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7949497	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100848200-100866000	Weak transcription	Psoas Muscle	Psoas
2	chr11:100848600-100865200	Weak transcription	Left Ventricle	heart
3	chr11:100848600-100865800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:100849200-100867400	Weak transcription	Fetal Lung	lung
5	chr11:100851000-100870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:100857600-100870400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:100858600-100865600	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:100858600-100870400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:100861800-100866000	Weak transcription	HSMMtube	muscle
10	chr11:100862400-100865600	Weak transcription	Placenta	Placenta
11	chr11:100862400-100866800	Weak transcription	Fetal Heart	heart
12	chr11:100864000-100867800	Weak transcription	Aorta	Aorta
13	chr11:100864400-100865200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links