Variant report

Variant	rs17726918
Chromosome Location	chr11:100843153-100843154
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100842079..100843901-chr11:100845694..100847786,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1047624	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11224511	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11224517	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11224518	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11224519	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11224520	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11224528	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11224529	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12273212	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12276190	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12281543	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12283290	0.93[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12285336	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12286700	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12286931	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12290272	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12417750	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17095808	1.00[YRI][hapmap]
rs17095820	1.00[YRI][hapmap]
rs17646129	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17646702	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17647068	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs17647243	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17648451	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17648695	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17654410	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17654633	0.97[EUR][1000 genomes]
rs17659845	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17713573	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17726649	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17726667	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17726715	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17727251	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17727449	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17727789	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17727843	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1940220	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1940222	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1944435	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2226640	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41392445	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs55952345	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56199820	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60312663	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7924400	0.89[EUR][1000 genomes]
rs7948907	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7949497	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100800200-100846600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:100807800-100844600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:100808000-100846600	Weak transcription	Ovary	ovary
4	chr11:100810000-100852200	Weak transcription	Small Intestine	intestine
5	chr11:100810400-100845000	Weak transcription	Primary B cells from cord blood	blood
6	chr11:100810600-100848400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:100813000-100848600	Weak transcription	A549	lung
8	chr11:100813200-100846600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:100820400-100847000	Weak transcription	Fetal Kidney	kidney
10	chr11:100827400-100846600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:100828400-100845400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:100828600-100846400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:100828800-100849400	Weak transcription	NHLF	lung
14	chr11:100829000-100849400	Weak transcription	HMEC	breast
15	chr11:100829200-100846800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:100829600-100849400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:100830000-100847600	Weak transcription	Psoas Muscle	Psoas
18	chr11:100830600-100858200	Weak transcription	Colonic Mucosa	Colon
19	chr11:100832200-100849600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:100834000-100847400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:100834400-100844600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:100834400-100847000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:100834400-100847200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:100834400-100851600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:100834800-100847200	Weak transcription	Stomach Mucosa	stomach
26	chr11:100835400-100845200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:100835600-100846600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:100835800-100846600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr11:100836400-100844600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:100836400-100846200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:100836600-100844600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:100836600-100846600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:100836600-100846600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:100838000-100844000	Weak transcription	Placenta	Placenta
35	chr11:100838800-100846600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:100839200-100844600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:100840000-100846600	Weak transcription	HSMMtube	muscle
38	chr11:100840200-100843400	Enhancers	K562	blood
39	chr11:100840400-100845200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:100840400-100845400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:100840400-100849200	Weak transcription	Dnd41	blood
42	chr11:100840600-100844000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:100840600-100845400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:100840600-100845400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr11:100840800-100845200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:100840800-100847200	Weak transcription	Osteobl	bone
47	chr11:100841000-100845200	Weak transcription	Fetal Intestine Large	intestine
48	chr11:100841000-100846600	Weak transcription	Gastric	stomach
49	chr11:100841200-100844600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:100841400-100850000	Weak transcription	Pancreas	Pancrea

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