Variant report

Variant	rs11224511
Chromosome Location	chr11:100778881-100778882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1047624	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11224517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224518	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224525	1.00[AFR][1000 genomes]
rs11224528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12273212	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12276190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12281097	0.87[AFR][1000 genomes]
rs12281543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12283290	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12285336	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12286700	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12286931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12287226	0.87[AFR][1000 genomes]
rs12290272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12417750	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17646129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17646702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17647068	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17647243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17648451	0.87[EUR][1000 genomes]
rs17648695	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17654410	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17654633	0.86[EUR][1000 genomes]
rs17659845	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17713573	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17726649	0.92[EUR][1000 genomes]
rs17726667	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17726715	0.92[EUR][1000 genomes]
rs17726918	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17727251	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17727449	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17727789	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17727843	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1940220	0.88[EUR][1000 genomes]
rs1940222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1944435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2226640	0.87[EUR][1000 genomes]
rs55952345	0.89[EUR][1000 genomes]
rs56199820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60312663	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7948907	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7949497	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:100758800-100789400	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:100758800-100791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:100761600-100788800	Weak transcription	Fetal Heart	heart
6	chr11:100762800-100779000	Weak transcription	NH-A	brain
7	chr11:100770400-100789800	Weak transcription	Fetal Stomach	stomach
8	chr11:100771200-100784600	Weak transcription	Fetal Intestine Small	intestine
9	chr11:100772000-100831400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:100773800-100779000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:100773800-100789600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:100773800-100789800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:100773800-100809800	Weak transcription	Left Ventricle	heart
14	chr11:100774400-100785200	Weak transcription	Liver	Liver
15	chr11:100774600-100779400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:100774800-100812800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:100776000-100794000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:100776800-100779600	Weak transcription	Psoas Muscle	Psoas
19	chr11:100776800-100789600	Weak transcription	Gastric	stomach
20	chr11:100777000-100780800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:100777400-100779800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:100777400-100794200	Weak transcription	Rectal Mucosa Donor 29	rectum

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