Variant report

Variant	rs17726667
Chromosome Location	chr11:100834003-100834004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1047624	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11224511	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11224517	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224518	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224519	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224520	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224525	1.00[AFR][1000 genomes]
rs11224528	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224529	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12273212	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12276190	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12281097	0.87[AFR][1000 genomes]
rs12281543	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12283290	0.93[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12285336	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12286700	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12286931	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12287226	0.87[AFR][1000 genomes]
rs12290272	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12417750	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17095808	1.00[YRI][hapmap]
rs17095820	1.00[YRI][hapmap]
rs17646129	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17646702	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17647068	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17647243	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17648451	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17648695	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17654410	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17654633	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17659845	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17713573	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17726649	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17726715	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17726918	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17727251	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17727449	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17727789	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17727843	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1940220	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1940222	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1944435	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2226640	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41392445	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs55952345	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56199820	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60312663	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7924400	0.86[EUR][1000 genomes]
rs7948907	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7949497	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100785400-100838400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:100800200-100846600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:100800800-100835800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:100801000-100835000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:100806600-100837200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:100807800-100844600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:100808000-100846600	Weak transcription	Ovary	ovary
8	chr11:100810000-100852200	Weak transcription	Small Intestine	intestine
9	chr11:100810400-100845000	Weak transcription	Primary B cells from cord blood	blood
10	chr11:100810600-100848400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:100812000-100841000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:100813000-100848600	Weak transcription	A549	lung
13	chr11:100813200-100838800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:100813200-100841400	Weak transcription	Fetal Stomach	stomach
15	chr11:100813200-100846600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:100813400-100834800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:100814200-100835600	Weak transcription	Dnd41	blood
18	chr11:100820400-100841400	Weak transcription	Right Ventricle	heart
19	chr11:100820400-100847000	Weak transcription	Fetal Kidney	kidney
20	chr11:100827200-100840200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:100827400-100846600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:100827600-100835000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:100828400-100845400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:100828600-100846400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr11:100828800-100849400	Weak transcription	NHLF	lung
26	chr11:100829000-100849400	Weak transcription	HMEC	breast
27	chr11:100829200-100834400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:100829200-100846800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:100829600-100841400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:100829600-100849400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:100830000-100847600	Weak transcription	Psoas Muscle	Psoas
32	chr11:100830200-100838000	Strong transcription	Placenta	Placenta
33	chr11:100830400-100839000	Strong transcription	Liver	Liver
34	chr11:100830600-100834800	Weak transcription	Fetal Heart	heart
35	chr11:100830600-100858200	Weak transcription	Colonic Mucosa	Colon
36	chr11:100831200-100836400	Strong transcription	Duodenum Mucosa	Duodenum
37	chr11:100831200-100837000	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:100831400-100836400	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr11:100831600-100834400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:100831800-100834200	Strong transcription	Left Ventricle	heart
41	chr11:100831800-100834200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:100831800-100835800	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr11:100831800-100836600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:100832000-100834200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:100832000-100834200	Strong transcription	Adipose Nuclei	Adipose
46	chr11:100832000-100836400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:100832000-100836400	Strong transcription	Fetal Muscle Leg	muscle
48	chr11:100832200-100834400	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:100832200-100834600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:100832200-100835400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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