Variant report

Variant	rs629813
Chromosome Location	chr11:100856632-100856633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100856345..100859552-chr11:100865744..100869877,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10488785	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs2509107	0.93[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs471933	0.82[CEU][hapmap]
rs4754715	0.94[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs561268	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs581921	1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap]
rs612046	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs631172	0.88[AFR][1000 genomes]
rs634636	0.94[CEU][hapmap];0.91[CHB][hapmap];0.80[AMR][1000 genomes]
rs651301	0.88[CEU][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];0.85[TSI][hapmap]
rs664212	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100830600-100858200	Weak transcription	Colonic Mucosa	Colon
2	chr11:100844000-100860200	Strong transcription	Placenta	Placenta
3	chr11:100844800-100863000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:100846200-100857400	Weak transcription	Fetal Brain Male	brain
5	chr11:100848000-100861800	Weak transcription	Fetal Heart	heart
6	chr11:100848200-100857400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:100848200-100858600	Weak transcription	Gastric	stomach
8	chr11:100848200-100859600	Weak transcription	Stomach Mucosa	stomach
9	chr11:100848200-100861200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:100848200-100866000	Weak transcription	Psoas Muscle	Psoas
11	chr11:100848400-100859800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:100848400-100859800	Weak transcription	Fetal Kidney	kidney
13	chr11:100848400-100860800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:100848400-100863200	Weak transcription	Fetal Intestine Large	intestine
15	chr11:100848400-100864600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:100848600-100859200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:100848600-100863400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:100848600-100865200	Weak transcription	Left Ventricle	heart
19	chr11:100848600-100865800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:100848800-100857600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:100848800-100858000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:100848800-100860000	Weak transcription	NH-A	brain
23	chr11:100848800-100864800	Weak transcription	HSMM	muscle
24	chr11:100849000-100862000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:100849000-100863000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:100849200-100867400	Weak transcription	Fetal Lung	lung
27	chr11:100850000-100859800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:100850000-100861600	Weak transcription	Adipose Nuclei	Adipose
29	chr11:100850600-100864600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:100851000-100858200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:100851000-100870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:100852000-100860400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:100852400-100857000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:100854600-100860600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:100854800-100857200	Weak transcription	Liver	Liver
36	chr11:100855600-100858800	Weak transcription	Primary B cells from cord blood	blood
37	chr11:100855800-100859600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr11:100856200-100857200	Strong transcription	Fetal Intestine Small	intestine
39	chr11:100856200-100857400	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr11:100856200-100858400	Strong transcription	HSMMtube	muscle
41	chr11:100856200-100858600	Strong transcription	Fetal Muscle Leg	muscle
42	chr11:100856400-100857200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:100856400-100857400	Strong transcription	Fetal Stomach	stomach
44	chr11:100856400-100858600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:100856400-100859400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr11:100856400-100860000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr11:100856400-100862600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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