Variant report
| Variant | rs517523 |
|---|---|
| Chromosome Location | chr15:50036633-50036634 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11070721 | 0.82[EUR][1000 genomes] |
| rs2414013 | 0.94[ASN][1000 genomes] |
| rs2444049 | 0.89[ASN][1000 genomes] |
| rs2449861 | 0.84[ASN][1000 genomes] |
| rs2452528 | 0.89[ASN][1000 genomes] |
| rs2456844 | 0.89[ASN][1000 genomes] |
| rs2456845 | 0.89[ASN][1000 genomes] |
| rs500721 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs504287 | 0.80[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs514103 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs515764 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs516375 | 0.91[ASN][1000 genomes] |
| rs554725 | 0.86[ASN][1000 genomes] |
| rs56711987 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs686620 | 0.80[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs691215 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs691741 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs691852 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs692106 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs692391 | 0.89[ASN][1000 genomes] |
| rs692531 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044277 | chr15:49921547-50702386 | Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| 2 | nsv542380 | chr15:49921547-50702386 | Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:50034000-50039000 | Weak transcription | K562 | blood |
