Variant report
| Variant | rs691741 |
|---|---|
| Chromosome Location | chr15:50057712-50057713 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:50057557..50060418-chr15:50060726..50063684,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11070721 | 0.82[EUR][1000 genomes] |
| rs11633470 | 1.00[CHB][hapmap] |
| rs11633571 | 0.82[CHB][hapmap] |
| rs12915207 | 0.82[CHB][hapmap] |
| rs16962994 | 0.82[CHB][hapmap] |
| rs16962999 | 0.82[CHB][hapmap] |
| rs2414013 | 0.97[ASN][1000 genomes] |
| rs2444049 | 0.97[ASN][1000 genomes] |
| rs2449860 | 1.00[JPT][hapmap] |
| rs2449861 | 0.92[ASN][1000 genomes] |
| rs2452528 | 0.97[ASN][1000 genomes] |
| rs2456844 | 1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs2456845 | 1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs4494482 | 0.82[CHB][hapmap] |
| rs4494483 | 0.82[CHB][hapmap] |
| rs4544192 | 0.82[CHB][hapmap] |
| rs500721 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs504287 | 0.97[ASN][1000 genomes] |
| rs514103 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs515764 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs516375 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs517523 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs554725 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56711987 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6493383 | 0.82[CHB][hapmap] |
| rs686620 | 0.97[ASN][1000 genomes] |
| rs691215 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs691852 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs692106 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs692391 | 0.92[ASN][1000 genomes] |
| rs692531 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8038434 | 0.82[CHB][hapmap] |
| rs8041979 | 0.82[CHB][hapmap] |
| rs8042458 | 0.82[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044277 | chr15:49921547-50702386 | Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| 2 | nsv542380 | chr15:49921547-50702386 | Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:50057400-50058200 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
