Variant report

Variant	rs518039
Chromosome Location	chr15:53422018-53422019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17659514	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3913949	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4776115	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs496150	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs501720	1.00[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs524344	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs528378	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833007	chr15:53264564-53453525	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904221	chr15:53279378-53434365	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1050535	chr15:53352572-53472957	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53420200-53422400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:53420800-53422200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr15:53421200-53423600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr15:53421200-53423800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr15:53421600-53422200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:53421600-53422400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:53421600-53422400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr15:53421800-53423400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:53422000-53422400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr15:53422000-53423200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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