Variant report

Variant	rs520028
Chromosome Location	chr6:150437749-150437750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12663840	0.94[ASN][1000 genomes]
rs6905963	0.94[ASN][1000 genomes]
rs7743003	0.94[ASN][1000 genomes]
rs7743210	0.94[ASN][1000 genomes]
rs7760021	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886771	chr6:150411442-150437749	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150436800-150437800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:150436800-150438200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:150437000-150437800	Enhancers	Esophagus	oesophagus
4	chr6:150437000-150438000	Enhancers	HMEC	breast
5	chr6:150437200-150438000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:150437200-150438000	Enhancers	NHEK	skin
7	chr6:150437200-150438200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:150437200-150438200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:150437200-150438200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:150437200-150440000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:150437400-150438000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:150437400-150438000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:150437400-150439800	Weak transcription	Right Atrium	heart
14	chr6:150437600-150437800	Enhancers	Brain Cingulate Gyrus	brain
15	chr6:150437600-150437800	Enhancers	Pancreas	Pancrea
16	chr6:150437600-150438000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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