Variant report

Variant	rs521153
Chromosome Location	chr10:6565099-6565100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs500766	1.00[CEU][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs519349	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs591397	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs667254	1.00[CEU][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6510000-6572000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:6553200-6571400	Weak transcription	Pancreas	Pancrea
3	chr10:6557400-6582400	Weak transcription	Dnd41	blood
4	chr10:6558800-6579400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:6561200-6568400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:6561600-6568200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:6561600-6570400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:6562600-6566000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:6562600-6572200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:6562800-6580000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:6563000-6566600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:6563000-6579200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:6563200-6566000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:6563200-6566000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:6563200-6566400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:6563200-6568200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:6563400-6565600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:6563400-6567600	Weak transcription	K562	blood
19	chr10:6563400-6568400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr10:6563400-6568600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:6563800-6565200	Weak transcription	Fetal Thymus	thymus
22	chr10:6563800-6566600	Weak transcription	Thymus	Thymus
23	chr10:6563800-6567000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:6563800-6567600	Weak transcription	Primary T cells from cord blood	blood
25	chr10:6564000-6566400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:6564400-6565400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:6564800-6565800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr10:6565000-6565600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:6565000-6566000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:6565000-6567800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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