Variant report

Variant	rs591397
Chromosome Location	chr10:6562241-6562242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6556912..6559699-chr10:6561579..6563335,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs500766	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs519349	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs521153	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs667254	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6510000-6572000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:6549800-6562400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:6550400-6562600	Weak transcription	Brain Substantia Nigra	brain
4	chr10:6550600-6562400	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:6553200-6571400	Weak transcription	Pancreas	Pancrea
6	chr10:6556400-6563400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:6557400-6582400	Weak transcription	Dnd41	blood
8	chr10:6557800-6563400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:6558200-6562400	Enhancers	Primary T cells from cord blood	blood
10	chr10:6558400-6563000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:6558400-6563200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr10:6558400-6563400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr10:6558800-6579400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:6560000-6562400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:6560000-6562800	Weak transcription	K562	blood
16	chr10:6560200-6562400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:6560800-6562400	Enhancers	Fetal Thymus	thymus
18	chr10:6561000-6563000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:6561200-6562600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:6561200-6563200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:6561200-6563400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:6561200-6568400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:6561600-6562400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:6561600-6568200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:6561600-6570400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:6561800-6562600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr10:6561800-6563200	Genic enhancers	Primary T cells fromperipheralblood	blood
28	chr10:6561800-6563200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:6561800-6564800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr10:6562000-6562800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:6562000-6563000	Enhancers	Brain Anterior Caudate	brain
32	chr10:6562000-6563200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr10:6562200-6562400	Bivalent Enhancer	Fetal Stomach	stomach
34	chr10:6562200-6562800	Enhancers	Fetal Muscle Trunk	muscle
35	chr10:6562200-6563000	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr10:6562200-6563800	Enhancers	Thymus	Thymus
37	chr10:6562200-6565000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links