Variant report

Variant	rs522600
Chromosome Location	chr6:145560445-145560446
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12189823	0.84[ASN][1000 genomes]
rs12190123	0.96[ASN][1000 genomes]
rs12197178	0.90[ASN][1000 genomes]
rs12206122	0.96[ASN][1000 genomes]
rs12206346	0.96[ASN][1000 genomes]
rs12525577	0.96[ASN][1000 genomes]
rs12525591	0.96[ASN][1000 genomes]
rs12527380	0.96[ASN][1000 genomes]
rs13210377	0.96[ASN][1000 genomes]
rs35112240	0.86[ASN][1000 genomes]
rs474537	0.96[ASN][1000 genomes]
rs543638	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs545242	0.84[EUR][1000 genomes]
rs560300	0.96[ASN][1000 genomes]
rs563324	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs566661	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs576429	0.83[EUR][1000 genomes]
rs993701	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145560400-145565800	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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