Variant report
Variant | rs5244 |
---|---|
Chromosome Location | chr14:24977594-24977595 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | BHLHE40 | chr14:24977363-24977725 | GM12878 | blood: | n/a | n/a |
2 | RUNX3 | chr14:24977337-24977664 | GM12878 | blood: | n/a | n/a |
3 | NFYB | chr14:24977452-24977638 | GM12878 | blood: | n/a | n/a |
4 | RUNX3 | chr14:24977354-24977735 | GM12878 | blood: | n/a | n/a |
5 | EBF1 | chr14:24977406-24977671 | GM12878 | blood: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
CMA1 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10143048 | 0.82[EUR][1000 genomes] |
rs10146671 | 0.87[EUR][1000 genomes] |
rs10220622 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes] |
rs11158727 | 0.89[EUR][1000 genomes] |
rs11627321 | 0.90[EUR][1000 genomes] |
rs11627992 | 0.89[EUR][1000 genomes] |
rs11848697 | 0.82[EUR][1000 genomes] |
rs11851739 | 0.90[EUR][1000 genomes] |
rs12436014 | 0.87[EUR][1000 genomes] |
rs12436015 | 0.87[EUR][1000 genomes] |
rs12436183 | 0.87[EUR][1000 genomes] |
rs12436184 | 0.87[EUR][1000 genomes] |
rs12436713 | 0.89[EUR][1000 genomes] |
rs12882754 | 0.80[EUR][1000 genomes] |
rs12887337 | 0.86[EUR][1000 genomes] |
rs12888641 | 0.86[EUR][1000 genomes] |
rs12892955 | 0.89[ASN][1000 genomes] |
rs12895103 | 0.84[EUR][1000 genomes] |
rs12896259 | 0.84[EUR][1000 genomes] |
rs17184843 | 0.90[CHB][hapmap];0.82[ASN][1000 genomes] |
rs1885108 | 0.85[TSI][hapmap];0.85[EUR][1000 genomes] |
rs1951133 | 0.85[TSI][hapmap];0.85[EUR][1000 genomes] |
rs1951138 | 0.89[EUR][1000 genomes] |
rs1951139 | 0.90[EUR][1000 genomes] |
rs1951140 | 0.90[EUR][1000 genomes] |
rs2253220 | 0.87[EUR][1000 genomes] |
rs2273627 | 0.89[EUR][1000 genomes] |
rs2332335 | 0.84[EUR][1000 genomes] |
rs2332336 | 0.90[EUR][1000 genomes] |
rs2332337 | 0.90[EUR][1000 genomes] |
rs2332338 | 0.90[EUR][1000 genomes] |
rs2332339 | 0.90[EUR][1000 genomes] |
rs2332340 | 0.90[EUR][1000 genomes] |
rs2332341 | 0.89[EUR][1000 genomes] |
rs2332342 | 0.88[EUR][1000 genomes] |
rs2332343 | 0.88[EUR][1000 genomes] |
rs2332344 | 0.90[EUR][1000 genomes] |
rs2332345 | 0.90[EUR][1000 genomes] |
rs2332346 | 0.90[EUR][1000 genomes] |
rs2332349 | 0.88[EUR][1000 genomes] |
rs2332350 | 0.89[EUR][1000 genomes] |
rs2332351 | 0.89[EUR][1000 genomes] |
rs2877643 | 0.84[EUR][1000 genomes] |
rs2877644 | 0.84[EUR][1000 genomes] |
rs2877646 | 0.90[EUR][1000 genomes] |
rs2877648 | 0.80[EUR][1000 genomes] |
rs34207026 | 0.90[EUR][1000 genomes] |
rs34967490 | 0.83[EUR][1000 genomes] |
rs35396435 | 0.90[EUR][1000 genomes] |
rs35741729 | 0.90[EUR][1000 genomes] |
rs3759635 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes] |
rs4403961 | 0.87[EUR][1000 genomes] |
rs4457901 | 0.89[EUR][1000 genomes] |
rs4467000 | 0.83[EUR][1000 genomes] |
rs4473103 | 0.82[EUR][1000 genomes] |
rs4508338 | 0.89[EUR][1000 genomes] |
rs4981528 | 0.90[EUR][1000 genomes] |
rs4982927 | 0.93[CEU][hapmap];0.81[EUR][1000 genomes] |
rs4982930 | 0.84[EUR][1000 genomes] |
rs4982933 | 0.93[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes] |
rs4982936 | 0.89[EUR][1000 genomes] |
rs4982938 | 0.89[EUR][1000 genomes] |
rs4982939 | 0.88[EUR][1000 genomes] |
rs4982940 | 0.93[CEU][hapmap];0.89[EUR][1000 genomes] |
rs4982941 | 0.89[EUR][1000 genomes] |
rs4982942 | 0.93[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes] |
rs4982943 | 0.89[EUR][1000 genomes] |
rs4982944 | 0.89[EUR][1000 genomes] |
rs5248 | 0.94[CHB][hapmap];0.89[CHD][hapmap];0.90[ASN][1000 genomes] |
rs61999093 | 0.83[EUR][1000 genomes] |
rs61999094 | 0.90[EUR][1000 genomes] |
rs61999100 | 0.90[EUR][1000 genomes] |
rs6573825 | 0.89[EUR][1000 genomes] |
rs6573826 | 0.89[EUR][1000 genomes] |
rs6573827 | 0.89[EUR][1000 genomes] |
rs7140707 | 0.82[EUR][1000 genomes] |
rs7142828 | 0.83[EUR][1000 genomes] |
rs7142862 | 0.84[EUR][1000 genomes] |
rs7143604 | 0.90[EUR][1000 genomes] |
rs7149997 | 0.84[EUR][1000 genomes] |
rs7152372 | 0.82[TSI][hapmap] |
rs7152718 | 0.83[EUR][1000 genomes] |
rs7152749 | 0.89[EUR][1000 genomes] |
rs7159031 | 0.90[EUR][1000 genomes] |
rs7159825 | 0.82[ASN][1000 genomes] |
rs7160659 | 0.90[EUR][1000 genomes] |
rs731768 | 0.80[EUR][1000 genomes] |
rs743214 | 0.83[EUR][1000 genomes] |
rs743215 | 0.89[EUR][1000 genomes] |
rs753068 | 0.89[EUR][1000 genomes] |
rs753069 | 0.89[EUR][1000 genomes] |
rs761989 | 0.83[EUR][1000 genomes] |
rs761991 | 0.89[EUR][1000 genomes] |
rs761993 | 0.88[EUR][1000 genomes] |
rs761994 | 0.89[EUR][1000 genomes] |
rs761995 | 0.89[EUR][1000 genomes] |
rs761996 | 0.89[EUR][1000 genomes] |
rs8005263 | 0.93[CEU][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes] |
rs8007187 | 0.89[EUR][1000 genomes] |
rs8011574 | 0.89[EUR][1000 genomes] |
rs8014283 | 0.87[EUR][1000 genomes] |
rs8015027 | 0.87[EUR][1000 genomes] |
rs8015201 | 0.87[EUR][1000 genomes] |
rs8015404 | 0.89[EUR][1000 genomes] |
rs8015553 | 0.89[EUR][1000 genomes] |
rs8017348 | 0.89[EUR][1000 genomes] |
rs8019282 | 0.90[EUR][1000 genomes] |
rs874397 | 0.89[EUR][1000 genomes] |
rs911373 | 0.88[EUR][1000 genomes] |
rs911374 | 0.89[EUR][1000 genomes] |
rs911375 | 0.89[EUR][1000 genomes] |
rs911376 | 0.88[EUR][1000 genomes] |
rs911377 | 0.89[EUR][1000 genomes] |
rs911378 | 0.89[EUR][1000 genomes] |
rs9788543 | 0.85[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1041336 | chr14:24726564-25527319 | Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
2 | nsv542000 | chr14:24726564-25527319 | Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
3 | nsv1053330 | chr14:24908047-24993666 | Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | n/a |
4 | esv2761824 | chr14:24914008-24993666 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | n/a |
5 | nsv1043355 | chr14:24914008-24993666 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | n/a |
6 | nsv1045732 | chr14:24914008-25019317 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | n/a |
7 | nsv521915 | chr14:24915383-24992619 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | n/a |
8 | nsv564062 | chr14:24915383-24992619 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | n/a |
9 | nsv1039955 | chr14:24927313-24993666 | Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | n/a |
10 | nsv1035903 | chr14:24929447-24981097 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | n/a |
11 | nsv542001 | chr14:24929447-24981097 | Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | n/a |
12 | nsv1042290 | chr14:24930993-24990765 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
13 | nsv542002 | chr14:24930993-24990765 | Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
14 | nsv983932 | chr14:24967593-24993536 | ZNF genes & repeats Weak transcription Enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:24971200-24977800 | Weak transcription | Gastric | stomach |
2 | chr14:24976800-24978200 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
3 | chr14:24977000-24978000 | Enhancers | GM12878-XiMat | blood |
4 | chr14:24977200-24977800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
5 | chr14:24977400-24977800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
6 | chr14:24977400-24978000 | Enhancers | Primary hematopoietic stem cells | blood |