Variant report

Variant	rs731768
Chromosome Location	chr14:24951160-24951161
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24950851..24951362-chr14:25074499..25075225,3	MCF-7	breast:
2	chr14:24950446..24951536-chr14:25147799..25148973,31	MCF-7	breast:
3	chr14:24950478..24951496-chr14:25147845..25148826,8	MCF-7	breast:
4	chr14:24950901..24951428-chr14:25147948..25148704,2	K562	blood:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10146671	0.84[EUR][1000 genomes]
rs11158727	0.87[EUR][1000 genomes]
rs11627321	0.85[EUR][1000 genomes]
rs11627992	0.87[EUR][1000 genomes]
rs11851739	0.86[EUR][1000 genomes]
rs12436014	0.86[EUR][1000 genomes]
rs12436015	0.86[EUR][1000 genomes]
rs12436183	0.86[EUR][1000 genomes]
rs12436184	0.86[EUR][1000 genomes]
rs12436713	0.87[EUR][1000 genomes]
rs12882754	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12887337	0.83[EUR][1000 genomes]
rs12888641	0.83[EUR][1000 genomes]
rs12895103	0.82[EUR][1000 genomes]
rs12896259	0.82[EUR][1000 genomes]
rs1885108	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1951133	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1951138	0.87[EUR][1000 genomes]
rs1951139	0.87[EUR][1000 genomes]
rs1951140	0.87[EUR][1000 genomes]
rs2253220	0.86[EUR][1000 genomes]
rs2273627	0.87[EUR][1000 genomes]
rs2332335	0.82[EUR][1000 genomes]
rs2332336	0.86[EUR][1000 genomes]
rs2332337	0.86[EUR][1000 genomes]
rs2332338	0.86[EUR][1000 genomes]
rs2332339	0.86[EUR][1000 genomes]
rs2332340	0.86[EUR][1000 genomes]
rs2332341	0.84[EUR][1000 genomes]
rs2332342	0.84[EUR][1000 genomes]
rs2332343	0.84[EUR][1000 genomes]
rs2332344	0.85[EUR][1000 genomes]
rs2332345	0.85[EUR][1000 genomes]
rs2332346	0.85[EUR][1000 genomes]
rs2332349	0.87[EUR][1000 genomes]
rs2332350	0.87[EUR][1000 genomes]
rs2332351	0.87[EUR][1000 genomes]
rs2877643	0.82[EUR][1000 genomes]
rs2877644	0.82[EUR][1000 genomes]
rs2877646	0.85[EUR][1000 genomes]
rs2877648	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34207026	0.85[EUR][1000 genomes]
rs35396435	0.85[EUR][1000 genomes]
rs35741729	0.85[EUR][1000 genomes]
rs4403961	0.86[EUR][1000 genomes]
rs4457901	0.87[EUR][1000 genomes]
rs4467000	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4508338	0.87[EUR][1000 genomes]
rs4981528	0.86[EUR][1000 genomes]
rs4982930	0.81[EUR][1000 genomes]
rs4982933	0.87[EUR][1000 genomes]
rs4982936	0.87[EUR][1000 genomes]
rs4982938	0.87[EUR][1000 genomes]
rs4982939	0.87[EUR][1000 genomes]
rs4982940	0.87[EUR][1000 genomes]
rs4982941	0.87[EUR][1000 genomes]
rs4982942	0.87[EUR][1000 genomes]
rs4982943	0.87[EUR][1000 genomes]
rs4982944	0.87[EUR][1000 genomes]
rs5244	0.80[EUR][1000 genomes]
rs61999094	0.85[EUR][1000 genomes]
rs61999100	0.85[EUR][1000 genomes]
rs6573825	0.87[EUR][1000 genomes]
rs6573826	0.87[EUR][1000 genomes]
rs6573827	0.87[EUR][1000 genomes]
rs7140707	0.84[EUR][1000 genomes]
rs7142828	0.80[EUR][1000 genomes]
rs7142862	0.81[EUR][1000 genomes]
rs7143604	0.86[EUR][1000 genomes]
rs7149997	0.81[EUR][1000 genomes]
rs7152372	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7152718	0.81[EUR][1000 genomes]
rs7152749	0.87[EUR][1000 genomes]
rs7159031	0.86[EUR][1000 genomes]
rs7160659	0.86[EUR][1000 genomes]
rs743214	0.82[EUR][1000 genomes]
rs743215	0.87[EUR][1000 genomes]
rs753068	0.87[EUR][1000 genomes]
rs753069	0.87[EUR][1000 genomes]
rs761989	0.82[EUR][1000 genomes]
rs761991	0.87[EUR][1000 genomes]
rs761993	0.87[EUR][1000 genomes]
rs761994	0.87[EUR][1000 genomes]
rs761995	0.87[EUR][1000 genomes]
rs761996	0.87[EUR][1000 genomes]
rs8005263	0.87[EUR][1000 genomes]
rs8007187	0.87[EUR][1000 genomes]
rs8011574	0.87[EUR][1000 genomes]
rs8014283	0.86[EUR][1000 genomes]
rs8015027	0.87[EUR][1000 genomes]
rs8015201	0.86[EUR][1000 genomes]
rs8015404	0.87[EUR][1000 genomes]
rs8015553	0.87[EUR][1000 genomes]
rs8017348	0.87[EUR][1000 genomes]
rs8019282	0.85[EUR][1000 genomes]
rs874397	0.87[EUR][1000 genomes]
rs911373	0.87[EUR][1000 genomes]
rs911374	0.87[EUR][1000 genomes]
rs911375	0.87[EUR][1000 genomes]
rs911376	0.87[EUR][1000 genomes]
rs911377	0.87[EUR][1000 genomes]
rs911378	0.87[EUR][1000 genomes]
rs9788543	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1053330	chr14:24908047-24993666	Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	n/a
4	esv2761824	chr14:24914008-24993666	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
5	nsv1043355	chr14:24914008-24993666	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
6	nsv1045732	chr14:24914008-25019317	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
7	esv19772	chr14:24914740-24951857	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
8	nsv523200	chr14:24915383-24975032	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
9	nsv521915	chr14:24915383-24992619	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
10	nsv564062	chr14:24915383-24992619	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
11	nsv1039955	chr14:24927313-24993666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
12	nsv1035903	chr14:24929447-24981097	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
13	nsv542001	chr14:24929447-24981097	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
14	nsv1042290	chr14:24930993-24990765	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
15	nsv542002	chr14:24930993-24990765	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24933000-24951400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:24950600-24951200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:24950800-24951200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr14:24950800-24951400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:24950800-24951600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:24950800-24953600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr14:24950800-24954400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:24951000-24951200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:24951000-24951200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:24951000-24951200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr14:24951000-24951200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr14:24951000-24951200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:24951000-24951200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr14:24951000-24951200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr14:24951000-24951200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:24951000-24951200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr14:24951000-24951200	Bivalent Enhancer	Adipose Nuclei	Adipose
18	chr14:24951000-24951200	Enhancers	Duodenum Mucosa	Duodenum
19	chr14:24951000-24951200	Enhancers	Fetal Thymus	thymus
20	chr14:24951000-24951200	Enhancers	Pancreas	Pancrea
21	chr14:24951000-24951200	Enhancers	Thymus	Thymus
22	chr14:24951000-24951400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr14:24951000-24951400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr14:24951000-24951400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr14:24951000-24951400	Enhancers	Primary B cells from peripheral blood	blood
26	chr14:24951000-24951400	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr14:24951000-24951400	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr14:24951000-24951400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr14:24951000-24951400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:24951000-24951400	Flanking Active TSS	Colonic Mucosa	Colon
31	chr14:24951000-24951400	Enhancers	Fetal Intestine Large	intestine
32	chr14:24951000-24951400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr14:24951000-24951600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:24951000-24951600	Enhancers	Primary T cells from cord blood	blood
35	chr14:24951000-24951600	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr14:24951000-24951600	Enhancers	Right Ventricle	heart
37	chr14:24951000-24951600	Flanking Active TSS	HepG2	liver
38	chr14:24951000-24951800	Enhancers	Spleen	Spleen
39	chr14:24951000-24952000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr14:24951000-24953600	Enhancers	Placenta	Placenta
41	chr14:24951000-24953800	Enhancers	GM12878-XiMat	blood
42	chr14:24951000-24954000	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links