Variant report

Variant	rs524797
Chromosome Location	chr11:121571469-121571470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1107375	1.00[ASN][1000 genomes]
rs1503419	1.00[ASN][1000 genomes]
rs17125690	1.00[ASN][1000 genomes]
rs2078363	1.00[ASN][1000 genomes]
rs73601402	1.00[ASN][1000 genomes]
rs73603325	1.00[ASN][1000 genomes]
rs73603330	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121567600-121571600	Weak transcription	Right Atrium	heart
2	chr11:121567600-121572400	Enhancers	Brain Substantia Nigra	brain
3	chr11:121568000-121572800	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:121568200-121573600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:121568200-121573600	Weak transcription	Fetal Stomach	stomach
6	chr11:121568200-121576600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:121570000-121571600	Enhancers	Brain Angular Gyrus	brain
8	chr11:121570000-121572800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:121570400-121571800	Enhancers	Fetal Brain Male	brain
10	chr11:121570600-121571600	Enhancers	Fetal Kidney	kidney
11	chr11:121571000-121572800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:121571200-121572800	Enhancers	Brain Anterior Caudate	brain
13	chr11:121571400-121572400	Enhancers	Fetal Heart	heart
14	chr11:121571400-121572600	Enhancers	Brain Hippocampus Middle	brain
15	chr11:121571400-121572800	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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