Variant report

Variant	rs17125690
Chromosome Location	chr11:121585962-121585963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1107375	1.00[ASN][1000 genomes]
rs1503419	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17125654	1.00[AMR][1000 genomes]
rs17125660	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2078363	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs524797	1.00[ASN][1000 genomes]
rs57764501	1.00[AMR][1000 genomes]
rs61703291	0.90[AFR][1000 genomes]
rs73587710	0.90[AFR][1000 genomes]
rs73601402	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73603325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73603330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73603356	0.82[AFR][1000 genomes]
rs73603375	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv975988	chr11:121574786-121593725	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv17895	chr11:121584567-121586152	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121584800-121586200	Weak transcription	Aorta	Aorta
2	chr11:121585000-121588000	Enhancers	HSMM	muscle
3	chr11:121585400-121586200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:121585800-121587400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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