Variant report

Variant	rs73603375
Chromosome Location	chr11:121629996-121629997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17125660	0.83[AFR][1000 genomes]
rs17125690	0.90[AFR][1000 genomes]
rs17125810	0.83[AFR][1000 genomes]
rs61703291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73026663	1.00[AMR][1000 genomes]
rs73587710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603325	0.90[AFR][1000 genomes]
rs73603330	0.90[AFR][1000 genomes]
rs73603356	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121620800-121632000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:121625600-121633600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:121625800-121632800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:121626200-121633800	Weak transcription	Fetal Kidney	kidney
5	chr11:121626400-121633200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:121627000-121633200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:121627200-121633200	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:121627200-121633400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:121628200-121632200	Weak transcription	Fetal Brain Female	brain
10	chr11:121628400-121632000	Weak transcription	Fetal Stomach	stomach
11	chr11:121628600-121632000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:121628800-121633200	Weak transcription	Brain Substantia Nigra	brain
13	chr11:121628800-121636200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:121629200-121633400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links