Variant report

Variant	rs17125810
Chromosome Location	chr11:121634406-121634407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121632571..121635461-chr11:121638427..121640406,2	K562	blood:
2	chr11:121632571..121635609-chr11:121638427..121640448,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61703291	0.83[AFR][1000 genomes]
rs73585670	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73587710	0.83[AFR][1000 genomes]
rs73603375	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753555	chr11:121630790-121646790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121628800-121636200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:121632000-121634800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:121632000-121634800	Enhancers	Fetal Stomach	stomach
4	chr11:121633200-121635000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:121633200-121635000	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:121633200-121635400	Enhancers	Primary B cells from cord blood	blood
7	chr11:121633600-121634800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr11:121633600-121638000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:121633800-121634800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:121633800-121638400	Weak transcription	Right Atrium	heart
11	chr11:121634000-121634600	Enhancers	Brain Germinal Matrix	brain
12	chr11:121634000-121634800	Enhancers	Brain Substantia Nigra	brain
13	chr11:121634000-121634800	Flanking Active TSS	GM12878-XiMat	blood
14	chr11:121634000-121637600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:121634000-121637800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:121634200-121635000	Weak transcription	Fetal Brain Male	brain
17	chr11:121634200-121635200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:121634400-121634600	Enhancers	Brain Anterior Caudate	brain
19	chr11:121634400-121636800	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:121634400-121637000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:121634400-121637000	Weak transcription	Fetal Brain Female	brain
22	chr11:121634400-121641600	Weak transcription	Fetal Heart	heart
23	chr11:121634400-121643600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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