Variant report
| Variant | rs525929 |
|---|---|
| Chromosome Location | chr1:59024985-59024986 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000162600 | Chromatin interaction |
| ENSG00000173406 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10789067 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12030713 | 0.85[ASN][1000 genomes] |
| rs1388981 | 0.85[ASN][1000 genomes] |
| rs1775002 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs232822 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs232826 | 0.86[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs232827 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs232830 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs232848 | 0.82[AMR][1000 genomes] |
| rs232849 | 0.82[AMR][1000 genomes] |
| rs3551 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs486463 | 0.87[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4912344 | 0.85[ASN][1000 genomes] |
| rs562166 | 0.82[AMR][1000 genomes] |
| rs584579 | 0.82[AMR][1000 genomes] |
| rs602579 | 0.82[AMR][1000 genomes] |
| rs603031 | 0.82[AMR][1000 genomes] |
| rs620342 | 0.82[AMR][1000 genomes] |
| rs627218 | 0.82[AMR][1000 genomes] |
| rs6587828 | 0.85[ASN][1000 genomes] |
| rs659061 | 0.87[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6667614 | 0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs672359 | 0.87[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs67639631 | 0.85[ASN][1000 genomes] |
| rs7517424 | 0.84[ASN][1000 genomes] |
| rs7520008 | 0.85[ASN][1000 genomes] |
| rs7544032 | 0.85[ASN][1000 genomes] |
| rs7547036 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9660901 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003930 | chr1:58930444-59157038 | Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs525929 | TACSTD2 | cis | Thyroid | GTEx |
| rs525929 | DAB1///OMA1 | Cis_1M | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
